Bioconductor SpikeIn

Showing : SpikeIn • reset

vote

replies

3.0k

views

CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 17 months ago by Bogdan ▴ 670 • written 3.5 years ago by Hesh ▴ 10

votes

replies

3.7k

views

edgeR SpikeIn RNASeq

updated 7 months ago by Miguel • 0 • written 3.2 years ago by robert.chen • 0

votes

replies

1.1k

views

ChIPSeq SpikeIn edgeR Normalization

2.7 years ago maria.soler • 0

votes

replies

1.6k

views

DiffBind SpikeIn Normalization ChIP-seq csaw

16 months ago • updated 15 months ago spg • 0

vote

replies

580

views

SpikeIn DiffBind

13 months ago Weisheng • 0

votes

replies

1.7k

views

DESeq2 SpikeIn Normalization DifferentialExpression

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by kalavattam ▴ 10

votes

1.3k

views

DESeq2 SpikeIn Normalization

updated 15 months ago by Michael Love 41k • written 15 months ago by kalavattam ▴ 10

votes

replies

698

views

SpikeIn SingleCell

2.7 years ago mb1996 • 0

votes

replies

views

DiffBind Errorinsocketconnection SpikeIn

10 days ago Virangika • 0

votes

replies

900

views

DiffBind ChIPSeq Normalization SpikeIn

2.6 years ago Drew • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0