Showing : Splatter • reset
0
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5
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1.2k
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How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter Splatter
updated 5.2 years ago by ▴ 50 • written 5.2 years ago by • 0
3
votes
3
replies
2.3k
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is SCEset fully abandoned in scran?
scran scater splatter normalization
updated 6.5 years ago by ▴ 90 • written 6.5 years ago by • 0
2
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3
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1.3k
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splatter simulating paths
splatter single cell
6.1 years ago nikolaspapadop ▴ 10
0
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3
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2.0k
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Trouble installing splatter
installation splatter
7.0 years ago luke.zappia ▴ 50
5
votes
2
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1.7k
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Accessing normalized counts
splatter singlecellexperiment scater
6.1 years ago luke.zappia ▴ 50
0
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2
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893
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I cannot install the splatter on colab
splatter biocmanager
written 3.1 years ago by • 0
4
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2
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943
views
Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago Brian Haas ▴ 90
1
vote
2
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841
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment splatter
2.5 years ago Fatima • 0
0
votes
1
reply
962
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Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData splatter
updated 2.0 years ago by ▴ 50 • written 2.0 years ago by • 0
0
votes
1
reply
915
views
Robustness of Splat cell grouping
splatter
6.9 years ago luke.zappia ▴ 50
0
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1
reply
1.1k
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Control group size
splatter
6.5 years ago luke.zappia ▴ 50
0
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1
reply
1.1k
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Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.5 years ago luke.zappia ▴ 50
0
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1
reply
880
views
Simulating paths returns identical values
splatter
6.1 years ago luke.zappia ▴ 50
1
vote
1
reply
968
views
Any pointers on simulating cell outliers?
splatter simulation
6.0 years ago luke.zappia ▴ 50
0
votes
1
reply
651
views
change values on Differential Expression parameters
splatter
updated 4.6 years ago by ▴ 50 • written 4.6 years ago by • 0
0
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1
reply
724
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DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by ▴ 50 • written 3.7 years ago by • 0
16 results • Page 1 of 1
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Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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