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StageR
•
reset
0
votes
10
replies
2.2k
views
Two treatments, one control
DESeq2
stageR
18 months ago
alephreish
• 0
0
votes
2
replies
888
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
2.2 years ago
jbono
▴ 10
0
votes
1
reply
972
views
stageR p-adj values of zero
stageR
updated 4.3 years ago by
Koen Van den Berge
▴ 180 • written 4.3 years ago by
giwa.ao
• 0
0
votes
1
reply
1.4k
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 6.8 years ago by
Koen Van den Berge
▴ 180 • written 6.9 years ago by
sdvie
• 0
2
votes
4
replies
2.3k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
7.0 years ago
d-joester
▴ 20
4
votes
4
replies
1.9k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 7.0 years ago by
Koen Van den Berge
▴ 180 • written 7.0 years ago by
maltethodberg
▴ 180
0
votes
3
replies
1.7k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
Jack.Hearn
• 0
1
vote
5
replies
2.3k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 7.2 years ago by
Michael Love
43k • written 7.3 years ago by
rbenel
▴ 50
2
votes
9
replies
2.7k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 7.5 years ago by
Koen Van den Berge
▴ 180 • written 7.5 years ago by
fiona.dick91
▴ 60
9 results • Page
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Comment: Ensembl site unresponsive via biomaRt
by
sebastianenewell
• 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package
by
Nguyen
• 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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