Bioconductor StageR

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2.1k

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DESeq2 stageR

17 months ago alephreish • 0

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879

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DEXSeq stageR

2.1 years ago jbono ▴ 10

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952

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stageR

updated 4.2 years ago by Koen Van den Berge ▴ 180 • written 4.2 years ago by giwa.ao • 0

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1.3k

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DRIMSeq stageR

updated 6.8 years ago by Koen Van den Berge ▴ 180 • written 6.8 years ago by sdvie • 0

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2.2k

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stageR rnaseqDTU DRIMSeq DEXSeq

6.9 years ago d-joester ▴ 20

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1.9k

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limma stageR decideTests

updated 6.9 years ago by Koen Van den Berge ▴ 180 • written 6.9 years ago by maltethodberg ▴ 180

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1.7k

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drimseq rnaseqdtu stager

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by Jack.Hearn • 0

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2.2k

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DEXSeq StageR rnaseqDTU

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by rbenel ▴ 50

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2.6k

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drimseq stageR dtu salmon rna seq

updated 7.4 years ago by Koen Van den Berge ▴ 180 • written 7.4 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0

I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…

Comment: segfault in edgeR glmQLFit by Mark • 0

Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k

> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…

Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0

Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…

Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0

In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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