Bioconductor StageR

Showing : StageR • reset

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1.1k

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DESeq2 stageR

4 months ago • updated 3 months ago alephreish • 0

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576

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DEXSeq stageR

12 months ago jbono ▴ 10

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711

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stageR

updated 3.1 years ago by Koen Van den Berge ▴ 180 • written 3.1 years ago by giwa.ao • 0

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977

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DRIMSeq stageR

updated 5.7 years ago by Koen Van den Berge ▴ 180 • written 5.7 years ago by sdvie • 0

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1.9k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.8 years ago d-joester ▴ 20

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1.5k

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limma stageR decideTests

updated 5.8 years ago by Koen Van den Berge ▴ 180 • written 5.8 years ago by maltethodberg ▴ 180

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1.2k

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drimseq rnaseqdtu stager

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by Jack.Hearn • 0

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1.8k

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DEXSeq StageR rnaseqDTU

updated 6.0 years ago by Michael Love 42k • written 6.1 years ago by rbenel ▴ 40

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2.0k

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drimseq stageR dtu salmon rna seq

updated 6.3 years ago by Koen Van den Berge ▴ 180 • written 6.3 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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