Bioconductor StageR

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DESeq2 stageR

5 months ago alephreish • 0

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614

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DEXSeq stageR

13 months ago jbono ▴ 10

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742

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stageR

updated 3.2 years ago by Koen Van den Berge ▴ 180 • written 3.2 years ago by giwa.ao • 0

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1.0k

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DRIMSeq stageR

updated 5.8 years ago by Koen Van den Berge ▴ 180 • written 5.8 years ago by sdvie • 0

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1.9k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.9 years ago d-joester ▴ 20

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1.5k

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limma stageR decideTests

updated 6.0 years ago by Koen Van den Berge ▴ 180 • written 6.0 years ago by maltethodberg ▴ 180

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1.3k

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drimseq rnaseqdtu stager

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by Jack.Hearn • 0

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1.8k

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DEXSeq StageR rnaseqDTU

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by rbenel ▴ 40

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2.1k

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drimseq stageR dtu salmon rna seq

updated 6.5 years ago by Koen Van den Berge ▴ 180 • written 6.5 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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