Bioconductor StageR

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2.0k

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DESeq2 stageR

15 months ago alephreish • 0

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837

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DEXSeq stageR

24 months ago jbono ▴ 10

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918

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stageR

updated 4.1 years ago by Koen Van den Berge ▴ 180 • written 4.1 years ago by giwa.ao • 0

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1.2k

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DRIMSeq stageR

updated 6.6 years ago by Koen Van den Berge ▴ 180 • written 6.7 years ago by sdvie • 0

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2.2k

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stageR rnaseqDTU DRIMSeq DEXSeq

6.8 years ago d-joester ▴ 20

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1.8k

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limma stageR decideTests

updated 6.8 years ago by Koen Van den Berge ▴ 180 • written 6.8 years ago by maltethodberg ▴ 180

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1.6k

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drimseq rnaseqdtu stager

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by Jack.Hearn • 0

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2.2k

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DEXSeq StageR rnaseqDTU

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by rbenel ▴ 50

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2.5k

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drimseq stageR dtu salmon rna seq

updated 7.3 years ago by Koen Van den Berge ▴ 180 • written 7.3 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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