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GDCdow tcgabiolinks error tcgadownload download_error

updated 6.9 years ago by Tiago Chedraoui Silva ▴ 260 • written 6.9 years ago by miki716 • 0

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1.5k

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tcgadownload deseq2 mirna normalization

updated 7.4 years ago by Lorena Pantano ▴ 140 • written 7.4 years ago by Björn • 0

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1.1k

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R tcgabiolinks tcgadownload error

8.4 years ago juniuskcc • 0

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4.5k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.6 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.8 years ago by enigmargs • 0

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5.8k

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tcgabiolinks tcgadownload

updated 9.0 years ago by Tiago Chedraoui Silva ▴ 260 • written 9.0 years ago by Leonardo Collado Torres ★ 1.1k

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5.3k

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tcgabiolinks tcgadownload

updated 4.4 years ago by H. Z. Amini ▴ 10 • written 9.3 years ago by sabarinath.chandrasekharan ▴ 10

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1.9k

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tcgabiolinks TCGAdownload

updated 9.3 years ago by Tiago C. Silva ▴ 270 • written 9.4 years ago by roladali ▴ 20

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1.1k

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tcgadownload

9.3 years ago maedakus ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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