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GDCdow tcgabiolinks error tcgadownload download_error

updated 6.0 years ago by Tiago Chedraoui Silva ▴ 260 • written 6.0 years ago by miki716 • 0

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tcgadownload deseq2 mirna normalization

updated 6.5 years ago by Lorena Pantano ▴ 140 • written 6.5 years ago by Björn • 0

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R tcgabiolinks tcgadownload error

7.5 years ago juniuskcc • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.7 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.9 years ago by enigmargs • 0

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4.9k

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tcgabiolinks tcgadownload

updated 8.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.1 years ago by Leonardo Collado Torres ★ 1.1k

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tcgabiolinks tcgadownload

updated 3.6 years ago by H. Z. Amini ▴ 10 • written 8.4 years ago by sabarinath.chandrasekharan ▴ 10

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1.6k

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tcgabiolinks TCGAdownload

updated 8.4 years ago by Tiago C. Silva ▴ 270 • written 8.5 years ago by roladali ▴ 20

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947

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tcgadownload

8.5 years ago maedakus ▴ 10

8 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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