Bioconductor TCGAdownload

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GDCdow tcgabiolinks error tcgadownload download_error

updated 6.8 years ago by Tiago Chedraoui Silva ▴ 260 • written 6.8 years ago by miki716 • 0

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tcgadownload deseq2 mirna normalization

updated 7.3 years ago by Lorena Pantano ▴ 140 • written 7.3 years ago by Björn • 0

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R tcgabiolinks tcgadownload error

8.3 years ago juniuskcc • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.5 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.7 years ago by enigmargs • 0

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tcgabiolinks tcgadownload

updated 8.9 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.9 years ago by Leonardo Collado Torres ★ 1.1k

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tcgabiolinks tcgadownload

updated 4.4 years ago by H. Z. Amini ▴ 10 • written 9.2 years ago by sabarinath.chandrasekharan ▴ 10

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tcgabiolinks TCGAdownload

updated 9.2 years ago by Tiago C. Silva ▴ 270 • written 9.3 years ago by roladali ▴ 20

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tcgadownload

9.2 years ago maedakus ▴ 10

8 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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