Bioconductor ToPASeq

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ToPASeq Deprecation

2.6 years ago pgauthi1 • 0

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842

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topaseq

updated 6.4 years ago by Gordon Smyth 51k • written 6.4 years ago by Aditya Saxena ▴ 10

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1.1k

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ToPASeq SPIA pathway analysis R

6.6 years ago fawazfebin ▴ 60

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1.1k

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topaseq

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by Aditya Saxena ▴ 10

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installation package installation topaseq igraph LD_LIBRARY_PATH

7.8 years ago jan.soderman • 0

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990

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ToPASeq

updated 7.9 years ago by theobroma22 ▴ 10 • written 7.9 years ago by rubi ▴ 110

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rnaseq Topaseq

8.6 years ago saamar.rajput • 0

7 results • Page 1 of 1

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Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…

Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

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Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

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