Bioconductor ToPASeq

Showing : ToPASeq • reset

votes

replies

901

views

ToPASeq Deprecation

2.5 years ago pgauthi1 • 0

votes

835

views

topaseq

updated 6.4 years ago by Gordon Smyth 51k • written 6.4 years ago by Aditya Saxena ▴ 10

votes

replies

1.1k

views

ToPASeq SPIA pathway analysis R

6.6 years ago fawazfebin ▴ 60

votes

1.1k

views

topaseq

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by Aditya Saxena ▴ 10

votes

replies

1.7k

views

installation package installation topaseq igraph LD_LIBRARY_PATH

7.8 years ago jan.soderman • 0

votes

984

views

ToPASeq

updated 7.9 years ago by theobroma22 ▴ 10 • written 7.9 years ago by rubi ▴ 110

vote

replies

1.5k

views

rnaseq Topaseq

8.5 years ago saamar.rajput • 0

7 results • Page 1 of 1

Recent ...

Replies

Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k

Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…

Comment: Tximport with RSEM error by Michael Love 42k

Would you post a new issue with example code and maybe what the files look like?

Votes

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

A: GOseq analysis with only upregulated or downregulated genes

Answer: Properly constructing a hypergeometric test

Awards • All

Popular Question to eve.olszanowski • 0