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ToPASeq
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0
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747
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Running deprecated packages
ToPASeq
Deprecation
2.1 years ago
pgauthi1
• 0
0
votes
1
reply
728
views
SPIA function error in ToPASeq
topaseq
updated 6.0 years ago by
Gordon Smyth
51k • written 6.0 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
982
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.2 years ago
fawazfebin
▴ 60
0
votes
1
reply
952
views
Problem in ToPASeq installation
topaseq
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.6k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.4 years ago
jan.soderman
• 0
0
votes
1
reply
878
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 7.4 years ago by
theobroma22
▴ 10 • written 7.5 years ago by
rubi
▴ 110
1
vote
2
replies
1.4k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.1 years ago
saamar.rajput
• 0
7 results • Page
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Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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