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ToPASeq
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0
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937
views
Running deprecated packages
ToPASeq
Deprecation
2.7 years ago
pgauthi1
• 0
0
votes
1
reply
860
views
SPIA function error in ToPASeq
topaseq
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.1k
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.7 years ago
fawazfebin
▴ 60
0
votes
1
reply
1.1k
views
Problem in ToPASeq installation
topaseq
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.8k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.9 years ago
jan.soderman
• 0
0
votes
1
reply
1.0k
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 8.0 years ago by
theobroma22
▴ 10 • written 8.0 years ago by
rubi
▴ 110
1
vote
2
replies
1.5k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.6 years ago
saamar.rajput
• 0
7 results • Page
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Recent ...
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Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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