Bioconductor VCF

Showing : VCF • reset

votes

replies

1.8k

views

variantannotation vcf fixed filter

11.0 years ago Anna N. • 0

votes

1.8k

views

annotation vcf readvcf variantannotation

11.1 years ago jls2282 • 0

votes

replies

1.7k

views

VCF iranges End software error variantannotation

11.2 years ago tiffanie.moss • 0

votes

replies

3.8k

views

variantannotation vcf

updated 11.2 years ago by Valerie Obenchain ★ 6.8k • written 11.2 years ago by bicycle1885 • 0

votes

replies

2.0k

views

vcf predict coding save file VariantAnnotation

updated 11.3 years ago by Thomas Sandmann ▴ 90 • written 11.3 years ago by anastasiya-terskih ▴ 10

55 results • Page 2 of 2

Recent ...

Replies

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All