Bioconductor VOOM

Showing : VOOM • reset

votes

replies

160

views

limma RNASeq voom

written 12 days ago by taur.vil • 0

votes

replies

190

views

Voom Limma WGCNA

4 weeks ago Gimena • 0

votes

replies

560

views

DEG edgeR limma voom filterByExpr

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

votes

replies

805

views

edgeR limma voom RNASeq muscat

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

votes

replies

533

views

stats r RNASeqData limma voom

5 months ago pl23 • 0

votes

replies

609

views

voom RNASeq limma

5 months ago Tyler Sagendorf ▴ 10

votes

replies

705

views

voom blocking limma

updated 6 months ago by Gordon Smyth 50k • written 6 months ago by Gerhard Thallinger ▴ 180

vote

984

views

GSEA voom limma

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

vote

replies

1.0k

views

limmaGUI normalization limma voom Normalization

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

votes

458

views

RNASeqData limma voom PFS DGE

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by manuelsokolov • 0

vote

replies

2.7k

views

limma edger timecourse without replicate voom

written 7.5 years ago by Camila Orellana ▴ 10

11 results • Page 1 of 1

Recent ...

Replies

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Awards • All

Scholar to ATpoint ★ 4.1k