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limma edger timecourse without replicate voom

written 7.5 years ago by Camila Orellana ▴ 10

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600

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DEG edgeR limma voom filterByExpr

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

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641

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voom RNASeq limma

6 months ago Tyler Sagendorf ▴ 10

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1.1k

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limmaGUI normalization limma voom Normalization

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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721

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voom blocking limma

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by Gerhard Thallinger ▴ 180

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190

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limma RNASeq voom

written 25 days ago by taur.vil • 0

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559

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stats r RNASeqData limma voom

5 months ago pl23 • 0

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473

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RNASeqData limma voom PFS DGE

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by manuelsokolov • 0

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1.0k

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GSEA voom limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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255

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rna-seq duplicateCorrelation limma voom

9 days ago • updated 8 days ago Dylan.Sheerin • 0

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207

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Voom Limma WGCNA

6 weeks ago Gimena • 0

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861

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edgeR limma voom RNASeq muscat

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

12 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That would probably make the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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