Showing : WALD • reset
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HELP - DESeq2 difference between LRT and Wald Test in RNA-seq/ATAC-seq
DESeq2 LRT Wald
updated 9 months ago by 68k • written 9 months ago by • 0
1
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3
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1.4k
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different stat and p values when filtering or not by lfc in DESeq2
DESeq2 wald stat
updated 2.6 years ago by ▴ 750 • written 2.6 years ago by • 0
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2
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2.0k
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same padj for all the genes after DEseq analysis
etLRT WALD edgeR DESEq
updated 3.7 years ago by 43k • written 3.7 years ago by • 0
1
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1
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993
views
multifactor desing with interaction LRT or Wald test?
deseq2 LRT wald
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by ▴ 10
1
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1
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1.3k
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Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 5.6 years ago by ▴ 890 • written 5.6 years ago by ▴ 10
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1
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2.2k
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DESeq2 test LRT or WALD
deseq2 LRT WALD
updated 5.7 years ago by 43k • written 5.7 years ago by • 0
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4
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1.6k
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DESeq2 Ribosome Profiling Time-series: Significantly Different Results for Wald and LRT test
deseq2 ribosome profiling wald lrt
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 20
5
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2
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4.5k
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deseq2 LRT vs Wald test results for DE expression among 4 conditions
rnaseq deseq2 lrt wald differential gene expression
updated 3.1 years ago by • 0 • written 7.6 years ago by • 0
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3
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3.0k
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Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2 wald lrt genes significance
updated 8.9 years ago by 43k • written 8.9 years ago by ▴ 20
2
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11
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20k
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logfoldStandard Error and wald-statistics in DESeq2 results
deseq2 wald
updated 3.5 years ago by 43k • written 10.2 years ago by ▴ 20
10 results • Page 1 of 1
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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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