Showing : affy • reset
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RMA: Affy MoEx and background correction
cdf affy cdf affy
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ▴ 70
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limma- nee help for a paired design with multiple factors
affy limma affy limma
15.0 years ago Huang, Tinghua [AN S] ▴ 10
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1.1k
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help with Affy ST gene arrays
affy affy
updated 15.0 years ago by ▴ 910 • written 15.0 years ago by ▴ 10
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1
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879
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segmentation for Affy SNP arrays Mapping50K_Hind240
SNP affy SNP affy
updated 15.0 years ago by ★ 2.4k • written 15.0 years ago by ▴ 140
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4
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help with affy st gene arrays
affy affy
updated 15.0 years ago by ▴ 170 • written 15.0 years ago by ▴ 170
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2
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2.8k
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Regression using LIMMA
affy limma DOSE affy limma DOSE
updated 15.0 years ago by ★ 6.0k • written 15.0 years ago by ▴ 380
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1.8k
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retrieve genes names after KEGG hypergeometric test
Annotation Pathways GO rat2302 probe affy Category Annotation Pathways GO rat2302 probe
updated 15.0 years ago by ▴ 930 • written 15.0 years ago by ▴ 230
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974
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miRNA normalization using affy package?
miRNA Normalization cdf affy miRNA Normalization cdf affy
updated 15.0 years ago by ★ 4.1k • written 15.0 years ago by ▴ 320
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4
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1.4k
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Incomplete EntrezID annotations for the Mouse 430 v2.0 probe-set
Annotation GO affy GOstats Annotation GO affy GOstats
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 110
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Cyclic Loess
Cancer affy Cancer affy
15.0 years ago viritha kaza ▴ 580
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4
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5.6k
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Generating .CHP files from .CEL files
affy affy
updated 15.0 years ago by ★ 2.4k • written 15.0 years ago by ▴ 40
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915
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Affy: reading several types of affymetrix arrays at once
cdf affy cdf affy
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 10
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1.3k
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how to map affy SNP ID to pubmed ID
SNP Annotation affy SNP Annotation affy
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 110
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Annotation package for affy SNP6.0
SNP probe affy SNP probe affy
15.0 years ago Qian Liu ▴ 110
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1.4k
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Bioconductor
cdf affy affyPara cdf affy affyPara
15.0 years ago Valerie Obenchain ★ 6.8k
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4
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2.6k
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affyPara
cdf affy affyPara cdf affy affyPara
15.1 years ago danieladna ▴ 110
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1.2k
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affypara
cdf affy affyPara cdf affy affyPara
updated 15.1 years ago by ★ 6.8k • written 15.1 years ago by ▴ 110
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Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
15.1 years ago James W. MacDonald 68k
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1.1k
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Simpleaffy problems
affy affy
updated 15.1 years ago by 68k • written 15.1 years ago by ▴ 110
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2.0k
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Question: How does limma derives its logFC value in two colored arrays?
Yeast affy vsn limma Yeast affy vsn limma
updated 15.1 years ago by ▴ 350 • written 15.1 years ago by 53k
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837
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PM values for probes in a probeset: background corrected and normalized, but not summarized?
Normalization affy Normalization affy
updated 15.1 years ago by 68k • written 15.1 years ago by ▴ 350
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Question: How does limma derives its logFC value in two colored arrays?
affy limma affy limma
15.1 years ago Sunny Srivastava ▴ 350
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1.2k
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unbalanced block design using limma
affy limma affy limma
15.1 years ago Gordon Smyth 53k
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1.2k
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unbalanced block design using limma
affy limma affy limma
15.1 years ago julin@aecom.yu.edu ▴ 80
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3
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1.4k
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Images from exon arrays
affy affyPLM affy affyPLM
15.1 years ago Popovic, Jelena ▴ 20
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10
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1.9k
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QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
cdf affy cdf affy
15.1 years ago Harry Mangalam ▴ 70
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1.1k
views
Celegans.db_2.3.5: Wormbase version
celegans affy convert celegans affy convert
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ★ 4.3k
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1.4k
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Limma: topTable without eBayes?
affy affy
updated 15.2 years ago by ★ 4.1k • written 15.2 years ago by 53k
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2.4k
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Limma: topTable without eBayes?
affy affy
updated 15.2 years ago by ★ 2.0k • written 15.2 years ago by ★ 4.1k
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2
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1.6k
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post-hoc test after F-test in Limma
affy limma affy limma
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 10
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928
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pa.calls-function in package "panp"
affy affy
15.2 years ago Samuel Wuest ▴ 330
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1
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1.3k
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labeling affy histogram
affy affy
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 80
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4
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1.5k
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unmapped keys in hugene10stprobeset.db
Annotation affy Annotation affy
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ★ 1.1k
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1.4k
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Affy ST 1.0 gene chip background probes cut off set up
affy PROcess xps affy PROcess xps
updated 15.2 years ago by ★ 3.9k • written 15.2 years ago by ▴ 40
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1.1k
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dynamic range/scale using exprs (Biobase)
Biobase affy Biobase affy
updated 15.3 years ago by ★ 2.3k • written 15.3 years ago by ▴ 330
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593
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SimpeAffy: how to get/generate qcdef file?
affy affy
15.3 years ago manjary singh ▴ 10
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7
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1.6k
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Affy PA calls
affy affy
15.3 years ago Loren Engrav ★ 1.0k
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Need help with pdInfoBuilder package for human ST arrays
Annotation affy oligo pdInfoBuilder Annotation affy oligo pdInfoBuilder
15.4 years ago He, Yiwen NIH/CIT ▴ 360
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1.2k
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Which package for gene expression correlation analysis
affy affy
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ▴ 30
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Which package for gene expression correlation analysis
Cancer affy Cancer affy
15.4 years ago Naomi Altman ★ 6.0k
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8
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1.8k
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Affymetrix HG U295 support in BioC?
cdf affy xps cdf affy xps
15.4 years ago Sole Acha, Xavi ▴ 110
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3
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1.4k
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affybatch object too big
affy affy
updated 15.4 years ago by ▴ 70 • written 15.4 years ago by ▴ 100
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4
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2.9k
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biomaRt
probe affy biomaRt probe affy biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 340
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1.0k
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bgx on data without replication
Microarray affy bgx Microarray affy bgx
15.4 years ago Ernest Turro ▴ 30
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1.4k
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Basic Question about gcrma & exporting to excel (command not working)
Microarray affy Microarray affy
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 10
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2
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1.1k
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Problem with gcrma
affy gcrma affy gcrma
updated 15.4 years ago by ▴ 10 • written 15.4 years ago by ▴ 140
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1.4k
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
15.4 years ago Dick Beyer ★ 1.4k
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763
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help with affy annotation
annotate affy annotate affy
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 20
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0
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1.0k
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GenomeGraphs issue
affy biomaRt GenomeGraphs affy biomaRt GenomeGraphs
15.5 years ago Zoppoli, Gabriele NIH/NCI [G] ▴ 20
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1
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1.3k
views
AFFX probes as result of differential expression analysis
hgu95a affy hgu95a affy
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 10
1,805 results • Page 10 of 37
Recent ...
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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