Showing : affy • reset
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Limma with contrasts
Microarray Normalization probe affy limma Microarray Normalization probe affy limma
15.8 years ago Matthew Willmann ▴ 60
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1
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1.6k
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Changes in siggenes?
Prostate hgu133a2 probe affy siggenes ASSIGN Prostate hgu133a2 probe affy siggenes
updated 15.8 years ago by ▴ 900 • written 15.8 years ago by ▴ 10
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Affy CEL file herder info
affy affy
updated 15.8 years ago by ★ 2.4k • written 15.8 years ago by ▴ 360
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[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
15.9 years ago James W. MacDonald 68k
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how to get gene list after hyperGTest (Yue, Chen - BMD)
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
15.9 years ago Bucher Elmar ▴ 80
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2
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2.0k
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Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 15.9 years ago by ▴ 70 • written 15.9 years ago by ▴ 60
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Finding longest transcript
affy affy
15.9 years ago Gad Abraham ▴ 110
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4
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2.3k
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hgu133plus2cdfSYMBOL not found
Cancer hgu133plus2 probe affy Cancer hgu133plus2 probe affy
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 60
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control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation Mus musculus probe affy Annotation Mus musculus probe affy
15.9 years ago Robert Castelo ★ 3.4k
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941
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Convert u133a probe Ids to exon array Ids
probe affy probe affy
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ★ 1.3k
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1.4k
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QCparameters for Human Exon arrays (arrayQualityMetrics)
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 16.0 years ago by ▴ 280 • written 16.0 years ago by ▴ 10
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4
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2.8k
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Installing affy package
Biobase affy Biobase affy
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 140
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827
views
Question on affybatch
probe affy probe affy
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 40
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3
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Agilent Array Analysis Question
affy limma Agi4x44PreProcess AgiMicroRna affy limma Agi4x44PreProcess AgiMicroRna
updated 16.0 years ago by ★ 1.3k • written 16.0 years ago by ▴ 350
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5
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2.1k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
16.0 years ago Michael Walter ▴ 160
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6
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1.9k
views
Is there a package or a way to convert "probesets" to "genes"
Microarray affy limma convert Microarray affy limma convert
updated 16.0 years ago by ▴ 430 • written 16.0 years ago by ▴ 100
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1
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1.6k
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Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 16.0 years ago by ▴ 430 • written 16.0 years ago by ▴ 410
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2
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1.3k
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Subsetting in xps
affy xps affy xps
16.0 years ago Michael Walter ▴ 160
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0
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1.1k
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affylmGUI
affy affylmGUI affy affylmGUI
16.0 years ago A. de Lang ▴ 10
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1
reply
1.8k
views
gene filtering for limma lmFit
Normalization affy limma Normalization affy limma
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 10
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8
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1.8k
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affy: expresso in separated steps
Normalization cdf affy Normalization cdf affy
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 90
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7
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1.9k
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Affy miRNA
miRNA affy miRNA affy
updated 16.1 years ago by ▴ 580 • written 16.1 years ago by ★ 1.3k
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1.1k
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Differential expression on individual Affy probes (Peter Saffrey)
probe affy probe affy
16.1 years ago L L ▴ 30
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1
reply
799
views
Differential expression on individual Affy probes
probe affy probe affy
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 70
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1
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1.2k
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Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 10
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only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO mouse4302 cdf affy GO mouse4302 cdf affy
16.1 years ago Jarek Bryk ▴ 110
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635
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Problem installing affy in Debian lenny 64 bits
affy affy
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 10
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9
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2.5k
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question about topTable ranking of limma
affy affy
updated 16.2 years ago by ★ 2.0k • written 16.2 years ago by ▴ 260
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3
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1.6k
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affy exon array analysis questions
Normalization probe affy Normalization probe affy
updated 16.2 years ago by ★ 3.9k • written 16.2 years ago by ▴ 260
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1.2k
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Error when running limma on low variance data
affy limma affy limma
updated 16.2 years ago by ▴ 580 • written 16.2 years ago by ▴ 10
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0
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1.5k
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Error when running limma on low variance data
affy limma affy limma
16.2 years ago Gordon Smyth 53k
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2
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1.4k
views
about citrus chip
probe affy gcrma probe affy gcrma
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 40
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2
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preprocessing Affymetrix with threestep and expresso
Microarray Normalization Preprocessing affy gcrma Microarray Normalization Preprocessing
updated 16.2 years ago by ★ 3.9k • written 16.2 years ago by ▴ 840
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1.0k
views
RMA values for Affy Mouse Exon array
cdf affy cdf affy
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 70
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2
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1.0k
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problem with Oligo package when analyzing SNP6.0
affy oligo affy oligo
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 20
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1
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1.2k
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Affy huGENE ST arrays
cdf affy affylmGUI cdf affy affylmGUI
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 10
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2
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1.1k
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support for miRNA-1_0?
affy microRNA affy microRNA
updated 16.2 years ago by ★ 3.9k • written 16.2 years ago by ★ 1.4k
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1.5k
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Limma lmFit function and spot quality weights
Microarray probe affy limma Microarray probe affy limma
16.3 years ago Gordon Smyth 53k
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6
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2.9k
views
venn diagram
Microarray affy limma Microarray affy limma
updated 16.3 years ago by ▴ 300 • written 16.3 years ago by ▴ 20
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1.0k
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gcrma/rma using drosophila CEL files, VECTOR_ELT() problem
affy affy
16.3 years ago Tobias Petri ▴ 40
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1
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1.3k
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Errors using particular 'Affy' package functions
cdf affy cdf affy
updated 16.3 years ago by 6.7k • written 16.3 years ago by ▴ 20
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0
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Error "Specified environment does notcontain MoGene-1_0-st-v1"
Normalization cdf affy Normalization cdf affy
16.3 years ago Groot, Philip de ▴ 630
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2
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1.8k
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question about p-values in maSigPro
affy maSigPro affy maSigPro
16.3 years ago Dick Beyer ★ 1.4k
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1
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1.4k
views
Fwd: problems installing 'affy'
affy preprocessCore affy preprocessCore
updated 16.3 years ago by 25k • written 16.3 years ago by ▴ 20
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848
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background correction on PM only: compute.affinities2()
affy gcrma affy gcrma
16.3 years ago Marianne Tuefferd ▴ 20
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0
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618
views
model parameter estimation in RMA
affy affy
16.4 years ago Zufar Mulyukov ▴ 10
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0
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945
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Creating one matrix of intensity data from 4 diffrent CEL files
Normalization cdf probe affy BufferedMatrix Normalization cdf probe affy BufferedMatrix
16.4 years ago Radhika Ambatipudi ▴ 20
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1.4k
views
Annotation.db: how automatically call a mapping?
Annotation GO moe430a affy limma annaffy affycoretools Annotation GO moe430a affy limma
16.4 years ago James W. MacDonald 68k
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1.3k
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justRMA() using different versions of affy
Normalization affy preprocessCore xps Normalization affy preprocessCore xps
16.4 years ago cstrato ★ 3.9k
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1.5k
views
normalize.quantiles function not recognized by R
affy affy
16.4 years ago Mohamed Lajnef ▴ 250
1,805 results • Page 12 of 37
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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