Showing : affy • reset
0
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7
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1.8k
views
RNA degradation problem
affy affy
updated 19.8 years ago by ▴ 940 • written 19.8 years ago by ▴ 810
0
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1
reply
1.3k
views
RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 19.8 years ago by ▴ 810 • written 19.8 years ago by ▴ 940
0
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4
replies
1.6k
views
affy & problems with not enough avaliable memory
affy gcrma affy gcrma
updated 19.8 years ago by ▴ 830 • written 19.8 years ago by ▴ 110
0
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1
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1.2k
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 890
0
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15
replies
2.9k
views
affy & problems with memory
affy gcrma affy gcrma
updated 19.8 years ago by ▴ 210 • written 19.8 years ago by ▴ 110
0
votes
5
replies
1.5k
views
Re-mapped Affy CDF files
Microarray Cancer cdf probe affy Microarray Cancer cdf probe affy
19.8 years ago James W. MacDonald 68k
0
votes
1
reply
4.9k
views
R package Installation Errors
Survival Biobase affy Survival Biobase affy
updated 19.8 years ago by 25k • written 19.8 years ago by ▴ 60
0
votes
0
replies
862
views
affymetrix pig annotation data
Genetics Annotation GO probe affy Genetics Annotation GO probe affy
19.8 years ago Henrik Hornshøj Jensen ▴ 90
0
votes
0
replies
773
views
geneName in GEOquery package
affy GLAD GEOquery affy GLAD GEOquery
19.8 years ago Sean Davis 21k
0
votes
1
reply
702
views
Upgrading to 1.7.0 under R 2.2.0
affy limma affy limma
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 70
0
votes
2
replies
1.4k
views
siggenes permutation count problem
Normalization affy siggenes Normalization affy siggenes
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 340
0
votes
0
replies
1.1k
views
missing function in duplicateCorrelation?
Biobase affy affydata limma affyPLM Biobase affy affydata limma affyPLM
19.9 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
683
views
Affy: Increase/Decrease two sided Wilcoxons test
probe affy probe affy
19.9 years ago Benjamin Otto ▴ 830
0
votes
0
replies
1.3k
views
R/maanova
Microarray affy limma maanova Microarray affy limma maanova
19.9 years ago Gary Churchill ▴ 10
0
votes
1
reply
1.2k
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 890
0
votes
4
replies
4.9k
views
how to use R read CHP file
affy affxparser affy affxparser
updated 19.9 years ago by ▴ 20 • written 19.9 years ago by ▴ 40
0
votes
0
replies
625
views
Single-Channel Normalization using Bioconductor
Normalization affy vsn limma Normalization affy vsn limma
19.9 years ago Gordon Smyth 53k
0
votes
2
replies
1.2k
views
bug in overview function of made4
Biobase affy marray convert made4 Biobase affy marray convert made4
updated 19.9 years ago by ▴ 510 • written 20.0 years ago by ★ 2.2k
0
votes
0
replies
663
views
normexp (limma) failure?
affy limma PROcess affy limma PROcess
20.0 years ago Gordon Smyth 53k
0
votes
4
replies
1.2k
views
Working with low abundance probesets !!
affy affy
20.0 years ago Sharon Anbu ▴ 480
0
votes
1
reply
854
views
double-logging in MAplot(abatch, pairs=T)
affy affy
updated 20.0 years ago by ★ 1.2k • written 20.0 years ago by ★ 2.2k
0
votes
0
replies
306
views
Affy autodownload cdf problem
Biobase affy Biobase affy
20.0 years ago Seth Falcon ★ 7.4k
0
votes
3
replies
1.3k
views
Affy autodownload cdf problem
cdf affy cdf affy
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by 21k
0
votes
1
reply
1.9k
views
Biobase/affy installation problem in linux
Biobase affy limma Biobase affy limma
updated 20.0 years ago by ▴ 780 • written 20.0 years ago by ▴ 100
0
votes
0
replies
1.1k
views
Cel -> MAGE-ML
Infrastructure affy RMAGEML Infrastructure affy RMAGEML
20.0 years ago Steffen Durinck ▴ 420
0
votes
4
replies
1.1k
views
How to save jpegs of all MAplots of an affybatch
affy affy
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 540
0
votes
3
replies
3.5k
views
How to match Locus IDs with Gene Ontology IDs?
GO affy GO affy
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 170
0
votes
1
reply
1.3k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 20.0 years ago by ▴ 950 • written 20.0 years ago by ▴ 190
0
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3
replies
1.3k
views
(no subject)
affy affy
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 220
0
votes
0
replies
728
views
In praise of name spaces (was: expresso still dying on list.files()--solved)
affy affy
20.0 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
745
views
normexp backgroundCorrect problem
affy limma affy limma
20.0 years ago Gordon Smyth 53k
0
votes
2
replies
1.5k
views
Which method best fit nylon single channel technology ?
affy limma oligo affy limma oligo
updated 20.0 years ago by ▴ 10 • written 20.0 years ago by ▴ 160
0
votes
3
replies
1.7k
views
grep GOID, R problem or my problem?
GO affy Category GO affy Category
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 810
0
votes
2
replies
1.4k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 890
0
votes
1
reply
977
views
expresso dies on list.files
affy affy
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 220
0
votes
2
replies
1.5k
views
Glyco gene chip
cdf affy cdf affy
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 100
0
votes
1
reply
729
views
Limma time course analysis : determining positively and negatively reg genes
affy limma affy limma
updated 20.1 years ago by 21k • written 20.1 years ago by ▴ 250
0
votes
5
replies
1.9k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 20.1 years ago by ★ 1.1k • written 20.1 years ago by ▴ 60
0
votes
0
replies
1.1k
views
PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
20.1 years ago Matthew Hannah ▴ 940
0
votes
3
replies
1.2k
views
Affymetrix gtype_cel_to_pq
affy affy
updated 20.1 years ago by ★ 6.5k • written 20.1 years ago by ★ 2.4k
0
votes
1
reply
962
views
error in getMonograph() - many packages not available
Biobase reposTools affy Biobase reposTools affy
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ★ 2.2k
0
votes
1
reply
686
views
bg.adjust.gcrma
cdf affy gcrma cdf affy gcrma
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 80
0
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0
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1.4k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
20.1 years ago Shi, Tao ▴ 720
0
votes
0
replies
837
views
memory problems on IRIX machine
cdf reposTools affy cdf reposTools affy
20.1 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
789
views
Q: phantom probsets created by combineAffyBatch?
cdf affy matchprobes cdf affy matchprobes
20.1 years ago C. Charles Gu ▴ 10
0
votes
3
replies
1.2k
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ▴ 890
0
votes
0
replies
961
views
want to compare hgu133a and hgu133plus2
hgu133a hgu133plus2 affy Resourcerer hgu133a hgu133plus2 affy Resourcerer
20.1 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
1.1k
views
affymetrix latin square
Cancer probe affy Cancer probe affy
20.2 years ago Crispin Miller ★ 1.1k
0
votes
1
reply
1.7k
views
Bioconductor Digest, Vol 31, Issue 7
Microarray Annotation Cancer probe multtest affy limma marray Microarray Annotation affy
20.2 years ago Shruti Subramaniam ▴ 30
1,805 results • Page 23 of 37
Recent ...
Replies
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
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