Showing : annaffy • reset
3
votes
1
reply
1.1k
views
Gene Ontology link in aaf.handler() not working
annaffy aafTableAnn Gene Ontology aaf.handler()
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
0
votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.8 years ago by ▴ 160 • written 9.9 years ago by 65k
0
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1
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1.5k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 10.3 years ago by 65k • written 10.3 years ago by ★ 13k
0
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2
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1.2k
views
Possible problem with Rhesus array annotation package
Annotation GO annotate annaffy Annotation GO annotate annaffy
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 30
0
votes
1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 20
0
votes
2
replies
1.0k
views
list of annaffy .db files?
Annotation annotate annaffy Annotation annotate annaffy
updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 80
0
votes
1
reply
936
views
help with multtest and annaffy
annaffy annaffy
updated 13.9 years ago by 65k • written 13.9 years ago by ▴ 90
0
votes
2
replies
1.2k
views
help with illumina microarray (DASL)
Microarray Annotation annaffy lumi Microarray Annotation annaffy lumi
updated 14.0 years ago by ★ 1.2k • written 14.0 years ago by ▴ 90
0
votes
3
replies
1.4k
views
help with annaffy package
GO annaffy GO annaffy
14.0 years ago Taylor, Katie ▴ 90
0
votes
1
reply
1.2k
views
annaffy-like HTML autput for org.Hs.eg.db and similar metadata packages
Microarray Annotation GO annaffy Microarray Annotation GO annaffy
updated 14.0 years ago by 6.7k • written 14.0 years ago by ▴ 40
0
votes
3
replies
1.2k
views
annotation of affymetrix microarray data
annotate annaffy annotate annaffy
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 90
0
votes
1
reply
903
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 14.0 years ago by 65k • written 14.0 years ago by ★ 2.0k
0
votes
2
replies
1.3k
views
probe to entrezID mapping with aafLocusLink
GO hgu133plus2 probe annaffy convert GO hgu133plus2 probe annaffy convert
updated 14.4 years ago by 65k • written 14.4 years ago by ▴ 10
0
votes
7
replies
1.7k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Annotation.db: how automatically call a mapping?
Annotation GO moe430a affy limma annaffy affycoretools Annotation GO moe430a affy limma
14.8 years ago James W. MacDonald 65k
0
votes
1
reply
935
views
problem with the structure of a list of pathways
Genetics Pathways probe annaffy Genetics Pathways probe annaffy
updated 14.9 years ago by 65k • written 14.9 years ago by ▴ 60
0
votes
0
replies
735
views
problem with annaffy package
annaffy annaffy
14.9 years ago Alberto Goldoni ▴ 420
0
votes
0
replies
947
views
problem using annotation database with annaffy
Annotation GO zebrafish annaffy Annotation GO zebrafish annaffy
14.9 years ago Georg Otto ▴ 510
0
votes
5
replies
1.2k
views
annotation information about ecoli2
Annotation GO probe annaffy Annotation GO probe annaffy
updated 15.5 years ago by 65k • written 15.5 years ago by ▴ 10
0
votes
2
replies
4.0k
views
Human Gene 1.0 ST array
Annotation probe annaffy Annotation probe annaffy
updated 15.6 years ago by 65k • written 15.6 years ago by ▴ 10
0
votes
5
replies
5.0k
views
Affymetrix probeset ids to gene symbols
annaffy annaffy
updated 15.8 years ago by ▴ 160 • written 15.8 years ago by ▴ 300
0
votes
0
replies
1.1k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
15.8 years ago Nick Henriquez ▴ 20
0
votes
2
replies
1.2k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 15.9 years ago by 65k • written 15.8 years ago by ▴ 30
0
votes
12
replies
2.0k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 160
0
votes
0
replies
832
views
annaffy w/yeast2
yeast2 annaffy yeast2 annaffy
16.0 years ago Sebastien Gerega ▴ 370
0
votes
0
replies
1.2k
views
BioConductor Developer Workshop Lausanne 2008 Info
SNP Annotation annaffy AnnBuilder biomaRt cellHTS2 SNP Annotation annaffy AnnBuilder
16.2 years ago Darlene Goldstein ▴ 230
0
votes
2
replies
1.2k
views
getURL in annaffy fails when object length==1 (or how to cope with collapsed lists, arrays, etc?)
annaffy annaffy
updated 16.2 years ago by ▴ 540 • written 16.2 years ago by ▴ 30
0
votes
0
replies
1.1k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
16.5 years ago Boel Brynedal ▴ 200
0
votes
1
reply
756
views
OMIM and annaffy
affy annaffy affy annaffy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 510
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 16.9 years ago by ★ 7.4k • written 17.0 years ago by ★ 2.2k
0
votes
1
reply
755
views
error in annaffy
annaffy annaffy
updated 17.0 years ago by 65k • written 17.0 years ago by ▴ 510
0
votes
0
replies
1.1k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.0 years ago stephen edwards ▴ 10
0
votes
2
replies
1.6k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.1 years ago by ▴ 680
0
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1
reply
1.1k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 17.1 years ago by 50k • written 17.1 years ago by ★ 2.2k
0
votes
1
reply
1.4k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
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1
reply
1.0k
views
amigo links: gene ontology annotation for probes
Annotation GO Biobase annotate annaffy Annotation GO Biobase annotate annaffy
updated 17.2 years ago by ▴ 10 • written 17.2 years ago by ▴ 220
0
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1
reply
1.2k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 320
0
votes
1
reply
1.1k
views
Problems with BioConductor 1.9 in R-2.4.1
annaffy annaffy
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 630
0
votes
2
replies
1.0k
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 17.4 years ago by 50k • written 17.4 years ago by ▴ 60
0
votes
1
reply
879
views
Annaffy problem loading metadata
mouse4302 annaffy mouse4302 annaffy
18.0 years ago Bornman, Daniel M ▴ 110
0
votes
2
replies
1.1k
views
AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 18.1 years ago by ▴ 780 • written 18.1 years ago by ★ 1.4k
0
votes
4
replies
1.4k
views
coerce aafTable object into dataframe (annaffy)
annaffy annaffy
18.2 years ago Georg Otto ▴ 510
0
votes
1
reply
888
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 18.4 years ago by 65k • written 18.4 years ago by ▴ 890
0
votes
2
replies
1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
0
votes
4
replies
970
views
GO package
annaffy annaffy
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 490
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
votes
3
replies
1.0k
views
misnamed annotation environments with annaffy
Annotation annaffy Annotation annaffy
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 320
0
votes
1
reply
991
views
annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
18.9 years ago Yanqin Yang ▴ 250
0
votes
0
replies
832
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
18.9 years ago Seth Falcon ★ 7.4k
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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
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Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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