Showing : arrayweights • reset
0
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Illumina array weights--arrayWeights or beadCountWeights
limma arrayweights
updated 7.2 years ago by 52k • written 7.2 years ago by ▴ 10
10
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4
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2.4k
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limma-trend with random effects and/or array weights
limma-trend duplicatecorrelation arrayweights limma
updated 7.3 years ago by 52k • written 7.3 years ago by ▴ 180
16
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0
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4.3k
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simultaneous use of robust and weighting methods in limma
limma robust arrayWeights
11.0 years ago • updated 8.6 years ago Gordon Smyth 52k
1
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2
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1.6k
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limma normalization and arrayWeights fold change
limma arrayweights logfoldchange neqc normalization
updated 8.6 years ago by ▴ 840 • written 8.6 years ago by • 0
0
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1
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1.4k
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Appropriate selection of DE list in limma before and after implementation of arrayWeights in conjuction with duplicateCorrelation functions
limma microarray multifactorial design duplicatecorrelation arrayweights
9.0 years ago svlachavas ▴ 840
7
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2
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2.5k
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Appropriate explanation of the methodology behind arrayWeights function from limma R package
limma arrayWeights variance sampleQuality microarray
updated 9.2 years ago by ★ 7.9k • written 9.2 years ago by ▴ 840
4
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8
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2.0k
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Combination of duplicateCorrelation with arrayWeights to increase power for DE detection in multilevel experiments
limma duplicatecorrelation arrayweights microarray
updated 9.2 years ago by 52k • written 9.2 years ago by ▴ 840
2
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2
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1.6k
views
Correct use of arrayWeights alongside duplicateCorrelation for microarrays in Limma?
limma duplicatecorrelation arrayweights
9.2 years ago willj ▴ 30
4
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5
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1.8k
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limma: genas + arrayweights = OK?
limma genas arrayweights
updated 9.3 years ago by 52k • written 9.3 years ago by ★ 4.1k
4
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1
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1.5k
views
simultaneous use of robust and weighting methods in limma.
limma arrayweights robust
updated 10.0 years ago by 52k • written 11.0 years ago by ▴ 80
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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
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C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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