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ashr
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3
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1.5k
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Massive L2FC in DESeq2
deseq2
ashr
rna-seq
4.0 years ago
Alex
• 0
2
votes
2
replies
1.0k
views
Ashr and IHW
Ashr
LFCShrinkage
IHW
DESeq2
2.4 years ago • updated 2.3 years ago
Bex
• 0
2
votes
1
reply
888
views
padj NA after shrinking log2FC (DESeq2)
deseq2
ashr
3.6 years ago
da.de
▴ 30
2
votes
2
replies
907
views
Negative svalues from DESeq2 lfcShrink with ashr
ashr
DESeq2
lfcShrink
svalue
3.2 years ago
Enrico
• 0
1
vote
5
replies
1.4k
views
lfcShrink probelm in many 0 count genes RNA-seq data
ashr
DESeq2
apeglm
updated 2.7 years ago by
Michael Love
42k • written 2.7 years ago by
Guandong Shang
▴ 40
0
votes
5
replies
2.0k
views
Deseq2, lfcThreshold .
ashr
Deseq2
lfcThreshold
updated 2.6 years ago by
Michael Love
42k • written 4.0 years ago by
Iryna
• 0
0
votes
2
replies
636
views
Ashr error: Optimization failed to converge. Results may be unreliable. Try increasing maxiter and rerunning.
ashr
4.0 years ago
kavator
▴ 30
0
votes
4
replies
663
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2
apeglm
DESeq
ApeGLM
Ashr
updated 9 months ago by
Michael Love
42k • written 9 months ago by
Ndimensional
▴ 20
8 results • Page
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by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
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by
Juan Higareda
• 0
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This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
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3.9k
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