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ashr
•
reset
3
votes
2
replies
1.5k
views
Ashr and IHW
Ashr
LFCShrinkage
IHW
DESeq2
3.3 years ago • updated 3.2 years ago
Bex
• 0
3
votes
4
replies
1.9k
views
Massive L2FC in DESeq2
deseq2
ashr
rna-seq
4.9 years ago
Alex
• 0
2
votes
2
replies
1.2k
views
Negative svalues from DESeq2 lfcShrink with ashr
ashr
DESeq2
lfcShrink
svalue
4.1 years ago
Enrico
• 0
2
votes
1
reply
1.1k
views
padj NA after shrinking log2FC (DESeq2)
deseq2
ashr
4.5 years ago
da.de
▴ 30
1
vote
5
replies
1.9k
views
lfcShrink probelm in many 0 count genes RNA-seq data
ashr
DESeq2
apeglm
updated 3.6 years ago by
Michael Love
43k • written 3.6 years ago by
Guandong Shang
▴ 40
0
votes
5
replies
2.7k
views
Deseq2, lfcThreshold .
ashr
Deseq2
lfcThreshold
updated 3.5 years ago by
Michael Love
43k • written 4.9 years ago by
Iryna
• 0
0
votes
4
replies
1.1k
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2
apeglm
DESeq
ApeGLM
Ashr
updated 20 months ago by
Michael Love
43k • written 20 months ago by
Ndimensional
▴ 20
0
votes
2
replies
844
views
Ashr error: Optimization failed to converge. Results may be unreliable. Try increasing maxiter and rerunning.
ashr
4.9 years ago
kavator
▴ 30
8 results • Page
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Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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