Showing : assign • reset
0
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3
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1.5k
views
mogene10stprobeset.db error
Normalization ASSIGN Normalization ASSIGN
updated 15.2 years ago by 6.7k • written 15.2 years ago by ▴ 170
0
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1
reply
1.5k
views
loop over IRanges spaces
Coverage convert rtracklayer ASSIGN Coverage convert rtracklayer ASSIGN
updated 15.3 years ago by ★ 11k • written 15.3 years ago by ▴ 60
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1
reply
959
views
single channel analysis
Annotation Normalization limma ASSIGN Annotation Normalization limma ASSIGN
updated 15.4 years ago by ▴ 860 • written 15.4 years ago by ▴ 740
0
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2
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1.2k
views
single channel analysis
Annotation ASSIGN Annotation ASSIGN
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 860
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1
reply
1.1k
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 15.4 years ago by 68k • written 15.4 years ago by ★ 2.0k
0
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3
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1.3k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.6 years ago by ★ 6.0k • written 15.6 years ago by ▴ 810
0
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1
reply
1.8k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 15.6 years ago by ★ 13k • written 15.6 years ago by 21k
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1
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1.3k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.6 years ago by ★ 6.0k • written 15.6 years ago by ▴ 810
0
votes
0
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1.0k
views
Any way to ouput the reordered gene list from heatmap.2()?
Cancer made4 ASSIGN Cancer made4 ASSIGN
15.6 years ago Steve Lianoglou ★ 13k
0
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1
reply
1.1k
views
Help on ROCR analysis
Genetics ASSIGN Genetics ASSIGN
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 80
0
votes
1
reply
1.5k
views
Changes in siggenes?
Prostate hgu133a2 probe affy siggenes ASSIGN Prostate hgu133a2 probe affy siggenes
updated 15.7 years ago by ▴ 900 • written 15.7 years ago by ▴ 10
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0
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903
views
Help on ROC analysis
Genetics MEDME ASSIGN Genetics MEDME ASSIGN
15.7 years ago Susan Bosco ▴ 80
0
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0
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1.2k
views
Limma- deleting control probes from differential expression analysis
Transcription ASSIGN Transcription ASSIGN
15.7 years ago Neel Aluru ▴ 460
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0
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770
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism GOstats topGO ASSIGN Annotation GO Organism GOstats topGO ASSIGN
16.2 years ago Pengcheng Yang ▴ 40
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3
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2.1k
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism ASSIGN Annotation GO Organism ASSIGN
updated 16.2 years ago by ▴ 40 • written 16.2 years ago by ▴ 340
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0
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776
views
Fwd: Re: which package can do GSEA for no model organism
GO Organism ASSIGN GO Organism ASSIGN
16.2 years ago Naomi Altman ★ 6.0k
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2
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1.1k
views
How to permute the CEL files
ASSIGN ASSIGN
updated 16.2 years ago by 25k • written 16.2 years ago by ▴ 840
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11
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2.4k
views
...another question about using weights on microarray analysis
Microarray limma ASSIGN Microarray limma ASSIGN
16.6 years ago Erika Melissari ▴ 250
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0
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954
views
array/spot quality control procedure on gene expression microarrays: What weights?
Normalization ASSIGN Normalization ASSIGN
16.6 years ago Erika Melissari ▴ 250
0
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1
reply
1.0k
views
reference argument in limma factorial design
Microarray ASSIGN Microarray ASSIGN
updated 16.6 years ago by ★ 6.0k • written 16.6 years ago by ▴ 100
0
votes
2
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1.1k
views
reference argument in limma factorial design
Microarray limma ASSIGN Microarray limma ASSIGN
updated 16.6 years ago by ★ 6.0k • written 16.6 years ago by 52k
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votes
1
reply
1.6k
views
Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 16.7 years ago by ▴ 30 • written 16.7 years ago by ▴ 90
0
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3
replies
2.7k
views
heatmap.2
ASSIGN ASSIGN
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 10
0
votes
1
reply
1.3k
views
FW: Request for the assistance to use MEDME
Normalization Organism probe MEDME cycle ASSIGN Normalization Organism probe MEDME cycle
updated 16.8 years ago by ▴ 30 • written 16.8 years ago by ▴ 90
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votes
0
replies
599
views
Integer index for mitochondrial chromosome?
ASSIGN ASSIGN
17.3 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
759
views
Limma: import files with genes missing
Annotation Cancer probe limma ASSIGN Annotation Cancer probe limma ASSIGN
17.4 years ago Gordon Smyth 52k
0
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1
reply
2.6k
views
pairs(): different ylim , xlim for upper.panel and lower.panel?
ASSIGN ASSIGN
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 50
0
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2
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968
views
modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 17.9 years ago by ▴ 120 • written 17.9 years ago by ▴ 10
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0
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1.2k
views
automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
17.9 years ago Gordon Smyth 52k
0
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0
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1.0k
views
automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
17.9 years ago Amin Moghaddasi ▴ 130
0
votes
1
reply
1.6k
views
simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 17.9 years ago by ★ 1.1k • written 17.9 years ago by ▴ 50
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0
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1.6k
views
Help with lm and predict
ASSIGN ASSIGN
18.1 years ago Nathan Haigh ▴ 120
0
votes
0
replies
948
views
Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
18.2 years ago Aedin Culhane ▴ 510
0
votes
2
replies
2.4k
views
Outputting dendrogram with large numbers of genes without losing resolution
ASSIGN ASSIGN
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Array normalisation with Limma: would this be reasonable?
ASSIGN ASSIGN
18.8 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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votes
2
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1.2k
views
Single Channel Approach for Agilent Arrays
limma ASSIGN limma ASSIGN
updated 18.9 years ago by ★ 6.0k • written 18.9 years ago by ▴ 100
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0
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1.0k
views
Top gene list
limma ASSIGN limma ASSIGN
19.0 years ago daphne mouzaki RI ▴ 80
0
votes
1
reply
1.1k
views
[R-SIG-Mac] trouble running Bioconductor
limma BUS ASSIGN limma BUS ASSIGN
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 430
0
votes
0
replies
910
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.2 years ago Wolfgang Huber ★ 13k
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0
replies
842
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.2 years ago Alessio Venier ▴ 40
0
votes
2
replies
1.7k
views
Limma: Extract genes from decideTests result
limma ASSIGN limma ASSIGN
updated 19.5 years ago by ▴ 100 • written 19.5 years ago by ▴ 360
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0
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923
views
R from Perl
ASSIGN ASSIGN
19.7 years ago Duncan Temple Lang ▴ 110
0
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0
replies
1.0k
views
Spot Quality Weights for Agilent arrays
ASSIGN ASSIGN
20.0 years ago Francesca Guana ▴ 10
0
votes
3
replies
1.7k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
20.1 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
4
replies
1.4k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 20.1 years ago by ▴ 170 • written 20.1 years ago by 52k
0
votes
3
replies
1.5k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 20.4 years ago by ▴ 760 • written 20.4 years ago by 52k
0
votes
0
replies
1.4k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
20.4 years ago Diego Diez ▴ 760
0
votes
3
replies
1.3k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 20.4 years ago by 68k • written 20.4 years ago by ▴ 120
0
votes
0
replies
1.0k
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.5 years ago Jain, Nitin ▴ 70
0
votes
0
replies
974
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.5 years ago Harry Hurd ▴ 60
123 results • Page 2 of 3
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Comment: voomLmFit fitted log-CPM values by Gordon Smyth 52k
The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be gettng confused by the differences …
Comment: voomLmFit fitted log-CPM values by Lina ▴ 10
Is the output from fitted(v) in the log2 CPM scale? or CPM scale?
Answer: voomLmFit fitted log-CPM values by Gordon Smyth 52k
Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```
Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
Comment: Length of 'dimnames' [1] not equal to array extent by Francesco Silvestro • 0
Resolved the error message!
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Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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