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Please help: AffylmGUI errors (more detail)
Normalization
hgu133a
affylmGUI
ASSIGN
Normalization
hgu133a
affylmGUI
ASSIGN
21.0 years ago
Aaron Hamilton
▴ 30
0
votes
1
reply
809
views
Please help: AffylmGUI errors
Microarray
affylmGUI
ASSIGN
Microarray
affylmGUI
ASSIGN
updated 21.0 years ago by
Seth Falcon
★ 7.4k • written 21.0 years ago by
Aaron Hamilton
▴ 30
0
votes
2
replies
1.3k
views
gene classification problem
GO
affy
ASSIGN
GO
affy
ASSIGN
updated 21.1 years ago by
Charles Berry
▴ 290 • written 21.1 years ago by
Kimpel, Mark W
▴ 890
0
votes
0
replies
1.0k
views
Limma and limmaGUI with Imagene files, problems/bugs report
Normalization
limma
limmaGUI
ASSIGN
Normalization
limma
limmaGUI
ASSIGN
21.2 years ago
Breuk102
▴ 50
0
votes
2
replies
1.3k
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma
limmaGUI
ASSIGN
limma
limmaGUI
ASSIGN
updated 21.2 years ago by
Gordon Smyth
53k • written 21.2 years ago by
Breuk102
▴ 50
0
votes
2
replies
1.5k
views
limma single-channel analysis and intraspotCorrelation
GO
limma
ASSIGN
GO
limma
ASSIGN
updated 21.2 years ago by
Gordon Smyth
53k • written 21.2 years ago by
Ren Na
▴ 250
0
votes
2
replies
1.2k
views
spot weight in limma
oligo
ASSIGN
oligo
ASSIGN
21.3 years ago
Ren Na
▴ 250
0
votes
0
replies
1.2k
views
SAM: the fudge factor in Siggenes and Excel
siggenes
ASSIGN
siggenes
ASSIGN
21.4 years ago
Caimiao Wei
▴ 100
0
votes
1
reply
1.1k
views
read.marrayRaw()
marray
ASSIGN
marray
ASSIGN
updated 21.5 years ago by
Jean Yee Hwa Yang
▴ 920 • written 21.5 years ago by
Julia Engelmann
▴ 130
0
votes
0
replies
1.6k
views
color labels in hclust plot
ASSIGN
ASSIGN
21.6 years ago
Rudy.vanEijsden@GEN.unimaas.nl
▴ 50
0
votes
1
reply
1.0k
views
maPrintTip confusion
GO
GeneSpring
ASSIGN
GO
GeneSpring
ASSIGN
updated 21.6 years ago by
Jean Yee Hwa Yang
▴ 920 • written 21.6 years ago by
Alison Wise
▴ 10
0
votes
0
replies
821
views
library versions problem
ASSIGN
ASSIGN
21.7 years ago
Rob Dunne
▴ 230
0
votes
3
replies
1.4k
views
comparing data frames
affy
ASSIGN
affy
ASSIGN
updated 21.7 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 21.7 years ago by
Straubhaar, Juerg
▴ 300
0
votes
1
reply
4.1k
views
how deal with multiplicate affy probes?
Alignment
mgu74av2
probe
affy
ASSIGN
Alignment
mgu74av2
probe
affy
ASSIGN
updated 21.8 years ago by
rgentleman
★ 5.5k • written 21.8 years ago by
Johnnidis, Jonathan
▴ 50
0
votes
0
replies
1.1k
views
Class discovery options?
affy
ASSIGN
affy
ASSIGN
21.8 years ago
Paul Boutros
▴ 340
0
votes
0
replies
915
views
error while running RMA
ASSIGN
ASSIGN
22.0 years ago
Jeff Lande
▴ 110
0
votes
0
replies
801
views
Re: flags?
ASSIGN
ASSIGN
22.1 years ago
Gordon Smyth
53k
0
votes
1
reply
1.1k
views
scatter plot
ASSIGN
ASSIGN
updated 22.2 years ago by
Marcelo Luiz de Laia
▴ 770 • written 22.2 years ago by
Liping Cheng
▴ 20
0
votes
1
reply
1.0k
views
mean of individual rows for subsets of columns in an ExprSet
ASSIGN
ASSIGN
updated 22.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.4 years ago by
Claire Wilson
▴ 280
0
votes
0
replies
1.1k
views
Re: LIMMA normalizeForPrintorder
BRAIN
Normalization
limma
ASSIGN
22.6 years ago • updated 6 months ago
Gordon Smyth
53k
0
votes
1
reply
2.0k
views
Problems with url/download and http_proxy
Biobase
annotate
edd
geneplotter
tkWidgets
ASSIGN
Biobase
annotate
edd
geneplotter
updated 23.6 years ago by
ripley@stats.ox.ac.uk
▴ 50 • written 23.6 years ago by
Warnes, Gregory R
▴ 460
0
votes
0
replies
2.0k
views
RE: [R] Problems with url/download and http_proxy
ASSIGN
ASSIGN
23.6 years ago
Warnes, Gregory R
▴ 460
0
votes
1
reply
1.3k
views
Re: order in affy for R
probe
affy
ASSIGN
probe
affy
ASSIGN
updated 23.6 years ago by
Rafael A. Irizarry
▴ 640 • written 23.6 years ago by
Laurent Gautier
★ 2.3k
123 results • Page
3 of 3
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Hugo Gruson
• 0
Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
Comment: Are individual-mouse-based statistics possible in CellChat?
by
LillianaVolkman99
• 0
thank you very much. https://www.biostars.org/p/9617271/
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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