Showing : assign • reset
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Please help: AffylmGUI errors (more detail)
Normalization hgu133a affylmGUI ASSIGN Normalization hgu133a affylmGUI ASSIGN
20.8 years ago Aaron Hamilton ▴ 30
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791
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Please help: AffylmGUI errors
Microarray affylmGUI ASSIGN Microarray affylmGUI ASSIGN
updated 20.8 years ago by ★ 7.4k • written 20.8 years ago by ▴ 30
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gene classification problem
GO affy ASSIGN GO affy ASSIGN
updated 20.9 years ago by ▴ 290 • written 20.9 years ago by ▴ 890
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Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
21.0 years ago Breuk102 ▴ 50
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2
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1.2k
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Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 21.0 years ago by 53k • written 21.0 years ago by ▴ 50
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2
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1.5k
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limma single-channel analysis and intraspotCorrelation
GO limma ASSIGN GO limma ASSIGN
updated 21.0 years ago by 53k • written 21.0 years ago by ▴ 250
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2
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1.1k
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spot weight in limma
oligo ASSIGN oligo ASSIGN
21.1 years ago Ren Na ▴ 250
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1.2k
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SAM: the fudge factor in Siggenes and Excel
siggenes ASSIGN siggenes ASSIGN
21.2 years ago Caimiao Wei ▴ 100
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1
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1.0k
views
read.marrayRaw()
marray ASSIGN marray ASSIGN
updated 21.3 years ago by ▴ 920 • written 21.3 years ago by ▴ 130
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1.6k
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color labels in hclust plot
ASSIGN ASSIGN
21.4 years ago Rudy.vanEijsden@GEN.unimaas.nl ▴ 50
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1
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1.0k
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maPrintTip confusion
GO GeneSpring ASSIGN GO GeneSpring ASSIGN
updated 21.4 years ago by ▴ 920 • written 21.4 years ago by ▴ 10
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794
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library versions problem
ASSIGN ASSIGN
21.5 years ago Rob Dunne ▴ 230
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3
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1.3k
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comparing data frames
affy ASSIGN affy ASSIGN
updated 21.5 years ago by ★ 1.8k • written 21.5 years ago by ▴ 300
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1
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4.0k
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how deal with multiplicate affy probes?
Alignment mgu74av2 probe affy ASSIGN Alignment mgu74av2 probe affy ASSIGN
updated 21.6 years ago by ★ 5.5k • written 21.6 years ago by ▴ 50
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Class discovery options?
affy ASSIGN affy ASSIGN
21.6 years ago Paul Boutros ▴ 340
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897
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error while running RMA
ASSIGN ASSIGN
21.8 years ago Jeff Lande ▴ 110
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786
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Re: flags?
ASSIGN ASSIGN
21.9 years ago Gordon Smyth 53k
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1
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1.1k
views
scatter plot
ASSIGN ASSIGN
updated 22.0 years ago by ▴ 770 • written 22.0 years ago by ▴ 20
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1
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1.0k
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mean of individual rows for subsets of columns in an ExprSet
ASSIGN ASSIGN
updated 22.3 years ago by 6.7k • written 22.3 years ago by ▴ 280
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1.1k
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Re: LIMMA normalizeForPrintorder
BRAIN Normalization limma ASSIGN
22.4 years ago • updated 4 months ago Gordon Smyth 53k
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1
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1.9k
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Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 23.4 years ago by ▴ 50 • written 23.4 years ago by ▴ 460
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2.0k
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RE: [R] Problems with url/download and http_proxy
ASSIGN ASSIGN
23.4 years ago Warnes, Gregory R ▴ 460
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1
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1.2k
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Re: order in affy for R
probe affy ASSIGN probe affy ASSIGN
updated 23.4 years ago by ▴ 640 • written 23.4 years ago by ★ 2.3k
123 results • Page 3 of 3
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Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…
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As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…
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Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…
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