Bioconductor Batch correction

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2.3k

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scrna-seq integration batch correction

updated 6.0 years ago by Aaron Lun ★ 29k • written 6.0 years ago by p.joshi ▴ 40

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1.8k

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methylation ComBat Linear models batch correction AIC

updated 6.1 years ago by Kevin Blighe ★ 4.0k • written 6.1 years ago by lucasmiranda42 • 0

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1.0k

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DESeq2 batch correction

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by MT ▴ 10

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1.4k

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Diffbind ATAC batch correction blocking factor

updated 6.4 years ago by Rory Stark ★ 5.2k • written 6.4 years ago by rm1238 • 0

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1.4k

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deseq2 differential expression batch correction design

updated 6.5 years ago by Michael Love 43k • written 6.6 years ago by wunderl ▴ 40

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2.1k

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deseq2 differential expression batch correction

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by wunderl ▴ 40

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2.6k

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SC3 Scater Scran scRNA-Seq Batch Correction

updated 6.8 years ago by Vladimir Kiselev ▴ 150 • written 6.8 years ago by hamza_karakurt ▴ 60

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Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaasocissalpc • 0

Just like attending workshops helps you improve skills in a field, playing 8 Ball Pool helps sharpen your strategy and precision. You can d…

Comment: Upcoming Ensembl API and data access changes - new blog post available by TikTsokaasocissalpc • 0

Thanks for sharing this update. Clear migration timelines and documentation are essential for learners and researchers alike. In healthcare…

Comment: ATACseq rudimentary questions by 4747 • 0

Thank you so much for being detailed, all makes sense now

Answer: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k

You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…

Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k

For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…

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Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?

A: limma-voom duplicateCorrelation once or twice, difference?

A: limma: comparison of repeat measurements - blocking or within-subject correlatio

Answer: DecideTest vs topTAGs in edgeR

A: LIMMA time series spline model.matrix design setup

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