Showing : batch correction • reset
3
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3
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1.8k
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fastMNN based correction for large multi-run experiment requires a similar population set in all the individual datasets?
scrna-seq integration batch correction
updated 4.8 years ago by ★ 28k • written 4.8 years ago by ▴ 40
0
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1
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1.2k
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Batch correction in Linear Models for methylation data
methylation ComBat Linear models batch correction AIC
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by • 0
5
votes
3
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762
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batch correction in DESeq2 > matrix not full rank > mitigate
DESeq2 batch correction
updated 5.0 years ago by 67k • written 5.0 years ago by ▴ 10
0
votes
3
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1.1k
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Diffbind batch effect blocking error
Diffbind ATAC batch correction blocking factor
updated 5.3 years ago by ★ 5.2k • written 5.3 years ago by • 0
1
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1
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1.1k
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All Pairwise Comparisons with DESeq2 While Controlling for Batch Effects: Does Reference Level Matter?
deseq2 differential expression batch correction design
updated 5.4 years ago by 42k • written 5.4 years ago by ▴ 40
4
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4
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1.6k
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Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (RUV, ComBat, ect.)
deseq2 differential expression batch correction
updated 5.4 years ago by 42k • written 5.4 years ago by ▴ 40
4
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5
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2.1k
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Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by ▴ 60
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
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Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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