Showing : biocviews • reset
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Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 13.1 years ago by ▴ 50 • written 13.1 years ago by ★ 13k
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5
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Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews VariantAnnotation Annotation biocViews Rsubread VariantAnnotation gmapR BiocViews
12.0 years ago Thomas Girke ★ 1.7k
2
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4
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3.3k
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makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.5 years ago by ★ 3.9k • written 12.5 years ago by ▴ 140
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pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 18.3 years ago by ★ 7.4k • written 18.4 years ago by ▴ 10
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An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 20
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2
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 10.4 years ago by • 0 • written 12.7 years ago by ★ 8.2k
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2
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 10.6 years ago by ▴ 20 • written 11.9 years ago by ▴ 40
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 biocViews
7.5 years ago • updated 13 months ago JennyS • 0
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1.2k
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getting a list of packages by biocView tags
BiocViews biocViews BiocViews BiocViews biocViews
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 50
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1
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2.1k
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confusion about nomenclature of illumina annotation packages
BiocViews annotate biocViews BiocViews BiocViews annotate biocViews
updated 17.4 years ago by ▴ 280 • written 17.4 years ago by ▴ 130
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inquiry for CDF file
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
17.2 years ago Rob Dunne ▴ 230
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1.2k
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error while using oligo to build a custom affy cdf
BiocViews cdf affy biocViews BiocViews BiocViews cdf affy biocViews
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 830
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1
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Affy Gene ST arrays with "oligo"
BiocViews Annotation Organism affy PROcess biocViews BiocViews BiocViews Annotation affy
updated 16.5 years ago by ★ 3.9k • written 16.5 years ago by ▴ 830
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1
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1.8k
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error fix.by(by.x, x) in Pdinfobuilder package
BiocViews Microarray Annotation Organism biocViews BiocViews BiocViews Microarray Organism
updated 15.2 years ago by ★ 4.3k • written 15.2 years ago by ▴ 60
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1.7k
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makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : , bind.data must have non-zero dimensions
BiocViews Annotation Organism biocViews BiocViews BiocViews Annotation Organism biocViews
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ▴ 20
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2
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oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ★ 13k
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1.6k
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AnnotationDbi: NewSchema vignette error
BiocViews miRNA Annotation Cancer Organism biocViews AnnotationDbi BiocViews BiocViews
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ▴ 910
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2.5k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ▴ 290
1
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3
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3.1k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 40
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1
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1.6k
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Question about sumbition process and biocviews
biocviews biocparallel github package submission
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 30
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.6 years ago zeynep özkeserli ▴ 160
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.6 years ago zeynep özkeserli ▴ 160
1
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1
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1.4k
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How to suggest BiocViews tags for an existing package?
biocviews champ
10.3 years ago Peter Hickey ▴ 760
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Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
13.2 years ago Dan Tenenbaum ★ 8.2k
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
15.6 years ago Julian Lee ▴ 10
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Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
17.3 years ago Ludo Muller ▴ 50
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0
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4.6k
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
11.7 years ago Dan Tenenbaum ★ 8.2k
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0
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4.7k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.2 years ago Dan Tenenbaum ★ 8.2k
0
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0
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1.6k
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BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
19.2 years ago Seth Falcon ★ 7.4k
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0
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1.6k
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
19.6 years ago Seth Falcon ★ 7.4k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.9 years ago Elena Serrano ▴ 30
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
15.5 years ago Marc Carlson ★ 7.2k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
17.4 years ago Lynn Amon ▴ 280
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0
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1.7k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.2 years ago Martin Morgan 25k
0
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0
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1.8k
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Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
14.5 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
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0
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2.5k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.7 years ago Elena Serrano ▴ 30
0
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0
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1.2k
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makeOrgPackageFromNCBI another error - reversed commands
BiocViews GO Organism ChipName biocViews BiocViews BiocViews GO Organism ChipName
13.8 years ago Guest User ★ 13k
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3
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qvalues installation
biocViews
4.8 years ago jdorgan • 0
38 results • Page 1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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