Showing : biocviews • reset
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Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 12.4 years ago by ▴ 50 • written 12.4 years ago by ★ 13k
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Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews VariantAnnotation Annotation biocViews Rsubread VariantAnnotation gmapR BiocViews
11.3 years ago • updated 11.2 years ago Thomas Girke ★ 1.7k
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makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 11.8 years ago by ★ 3.9k • written 11.8 years ago by ▴ 140
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pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 17.6 years ago by ★ 7.4k • written 17.6 years ago by ▴ 10
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An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ▴ 20
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 9.7 years ago by • 0 • written 12.0 years ago by ★ 8.2k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.9 years ago by ▴ 20 • written 11.2 years ago by ▴ 40
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 biocViews
6.8 years ago • updated 3 months ago JennyS • 0
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1.1k
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getting a list of packages by biocView tags
BiocViews biocViews BiocViews BiocViews biocViews
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 50
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1
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2.0k
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confusion about nomenclature of illumina annotation packages
BiocViews annotate biocViews BiocViews BiocViews annotate biocViews
updated 16.7 years ago by ▴ 280 • written 16.7 years ago by ▴ 130
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inquiry for CDF file
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
16.5 years ago Rob Dunne ▴ 230
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error while using oligo to build a custom affy cdf
BiocViews cdf affy biocViews BiocViews BiocViews cdf affy biocViews
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 830
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1.9k
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Affy Gene ST arrays with "oligo"
BiocViews Annotation Organism affy PROcess biocViews BiocViews BiocViews Annotation affy
updated 15.8 years ago by ★ 3.9k • written 15.8 years ago by ▴ 830
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1
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1.7k
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error fix.by(by.x, x) in Pdinfobuilder package
BiocViews Microarray Annotation Organism biocViews BiocViews BiocViews Microarray Organism
updated 14.4 years ago by ★ 4.3k • written 14.4 years ago by ▴ 60
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1.6k
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makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : , bind.data must have non-zero dimensions
BiocViews Annotation Organism biocViews BiocViews BiocViews Annotation Organism biocViews
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 20
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oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ★ 13k
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1.5k
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AnnotationDbi: NewSchema vignette error
BiocViews miRNA Annotation Cancer Organism biocViews AnnotationDbi BiocViews BiocViews
updated 12.7 years ago by ★ 7.2k • written 12.7 years ago by ▴ 910
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1
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2.3k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 11.3 years ago by ★ 4.3k • written 11.3 years ago by ▴ 290
1
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3
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2.7k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 40
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1
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1.4k
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Question about sumbition process and biocviews
biocviews biocparallel github package submission
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 30
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.9 years ago zeynep özkeserli ▴ 160
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.9 years ago zeynep özkeserli ▴ 160
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1
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1.3k
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How to suggest BiocViews tags for an existing package?
biocviews champ
9.5 years ago Peter Hickey ▴ 750
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Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
12.5 years ago Dan Tenenbaum ★ 8.2k
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
14.8 years ago Julian Lee ▴ 10
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Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
16.5 years ago Ludo Muller ▴ 50
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0
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4.4k
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.9 years ago Dan Tenenbaum ★ 8.2k
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0
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4.4k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
11.4 years ago Dan Tenenbaum ★ 8.2k
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0
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1.5k
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BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
18.5 years ago Seth Falcon ★ 7.4k
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0
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1.5k
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
18.9 years ago Seth Falcon ★ 7.4k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.2 years ago Elena Serrano ▴ 30
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
14.8 years ago Marc Carlson ★ 7.2k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
16.7 years ago Lynn Amon ▴ 280
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0
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1.6k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
14.4 years ago Martin Morgan 25k
0
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0
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1.7k
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Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
13.7 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
0
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0
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2.3k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
10.9 years ago Elena Serrano ▴ 30
0
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0
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1.1k
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makeOrgPackageFromNCBI another error - reversed commands
BiocViews GO Organism ChipName biocViews BiocViews BiocViews GO Organism ChipName
13.0 years ago Guest User ★ 13k
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3
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1.4k
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qvalues installation
biocViews
4.1 years ago jdorgan • 0
38 results • Page 1 of 1
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Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by shepherl 4.1k
Can you try `BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene", type="source")`
Comment: Limma - Complex 2-way multi-level contrast with paired samples by Elizabeth • 0
Thank you very much, James! I wasn't aware of voomLmFit, and using it gave me more logical DEG. I really appreciate your time and effort!
Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
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Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
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