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biocviews
•
reset
0
votes
3
replies
1.3k
views
qvalues installation
biocViews
3.8 years ago
jdorgan
• 0
0
votes
2
replies
1.3k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
biocViews
6.5 years ago • updated 24 days ago
JennyS
• 0
0
votes
1
reply
1.3k
views
Question about sumbition process and biocviews
biocviews
biocparallel
github
package submission
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
ioannis.vardaxis
▴ 30
1
vote
1
reply
1.2k
views
How to suggest BiocViews tags for an existing package?
biocviews
champ
9.3 years ago
Peter Hickey
▴ 740
0
votes
2
replies
4.0k
views
Bioconductor 2.12 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
Microarray
Coverage
Alignment
Annotation
GO
updated 9.4 years ago by
marksteve952
• 0 • written 11.7 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
2.0k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 9.6 years ago by
Jason Hubbard
▴ 20 • written 10.9 years ago by
Guilherme Rocha
▴ 40
1
vote
3
replies
2.7k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
BiocViews
BiocViews
Annotation
updated 10.3 years ago by
James W. MacDonald
67k • written 10.3 years ago by
Guilherme Rocha
▴ 40
0
votes
0
replies
2.3k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
10.6 years ago
Elena Serrano
▴ 30
0
votes
0
replies
4.3k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
10.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
3.6k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
10.9 years ago
Elena Serrano
▴ 30
0
votes
5
replies
2.2k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
11.0 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
2.2k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
updated 11.1 years ago by
Benilton Carvalho
★ 4.3k • written 11.1 years ago by
Stephen Turner
▴ 290
0
votes
0
replies
4.3k
views
Bioconductor 2.13 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
miRNA
Microarray
Genetics
Proteomics
Coverage
11.2 years ago
Dan Tenenbaum
★ 8.2k
2
votes
4
replies
2.9k
views
makePdInfoPackage for Primeview arrays
BiocViews
Annotation
Cancer
Organism
cdf
probe
affy
biocViews
BiocViews
BiocViews
Cancer
updated 11.5 years ago by
cstrato
★ 3.9k • written 11.5 years ago by
Max Kauer
▴ 140
0
votes
4
replies
1.7k
views
Passing multiple files to pdInfobuilder
BiocViews
biocViews
pdInfoBuilder
BiocViews
BiocViews
biocViews
pdInfoBuilder
updated 12.1 years ago by
Benilton Carvalho
▴ 50 • written 12.1 years ago by
Guest User
★ 13k
0
votes
0
replies
3.3k
views
Bioconductor 2.11 is released
BiocViews
SNP
Transcription
Sequencing
miRNA
Microbiome
Microarray
qPCR
Genetics
Coverage
12.2 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
1.5k
views
AnnotationDbi: NewSchema vignette error
BiocViews
miRNA
Annotation
Cancer
Organism
biocViews
AnnotationDbi
BiocViews
BiocViews
updated 12.5 years ago by
Marc Carlson
★ 7.2k • written 12.5 years ago by
Mark Cowley
▴ 910
0
votes
0
replies
1.4k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.6 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.5k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.6 years ago
zeynep özkeserli
▴ 160
0
votes
2
replies
1.5k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews
Organism
biocViews
oligo
pdInfoBuilder
BiocViews
BiocViews
Organism
biocViews
updated 12.7 years ago by
Benilton Carvalho
★ 4.3k • written 12.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
makeOrgPackageFromNCBI another error - reversed commands
BiocViews
GO
Organism
ChipName
biocViews
BiocViews
BiocViews
GO
Organism
ChipName
12.8 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : , bind.data must have non-zero dimensions
BiocViews
Annotation
Organism
biocViews
BiocViews
BiocViews
Annotation
Organism
biocViews
updated 12.8 years ago by
Benilton Carvalho
★ 4.3k • written 12.8 years ago by
mabawsa
▴ 20
0
votes
0
replies
1.6k
views
Using pdInfoBuilder for Human Exon Array
BiocViews
Annotation
Organism
cdf
biocViews
oligo
pdInfoBuilder
BiocViews
BiocViews
cdf
13.5 years ago
Maria Rodrigo-Domingo / Region Nordjyll…
▴ 10
0
votes
4
replies
4.6k
views
An error in oligo: All the CEL files must be of the same type??
BiocViews
Annotation
Organism
biocViews
oligo
BiocViews
BiocViews
Annotation
Organism
updated 13.5 years ago by
Benilton Carvalho
★ 4.3k • written 13.5 years ago by
Setsuko Sahara
▴ 20
0
votes
0
replies
1.5k
views
Bioconductor 2.7 is released
BiocViews
aCGH
Transcription
RNASeq
miRNA
Microarray
Normalization
Network
Bayesian
aCGH
14.2 years ago
Martin Morgan
25k
0
votes
1
reply
1.6k
views
error fix.by(by.x, x) in Pdinfobuilder package
BiocViews
Microarray
Annotation
Organism
biocViews
BiocViews
BiocViews
Microarray
Organism
updated 14.2 years ago by
Benilton Carvalho
★ 4.3k • written 14.2 years ago by
Michael MOZAR
▴ 60
0
votes
0
replies
1.3k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews
Genetics
Annotation
GO
Organism
probe
biocViews
AnnotationDbi
BiocViews
GO
14.5 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.1k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews
Genetics
Annotation
GO
Organism
biocViews
AnnotationDbi
BiocViews
BiocViews
GO
14.6 years ago
Julian Lee
▴ 10
0
votes
1
reply
1.8k
views
Affy Gene ST arrays with "oligo"
BiocViews
Annotation
Organism
affy
PROcess
biocViews
BiocViews
BiocViews
Annotation
affy
updated 15.5 years ago by
cstrato
★ 3.9k • written 15.5 years ago by
Cei Abreu-Goodger
▴ 830
0
votes
1
reply
1.1k
views
error while using oligo to build a custom affy cdf
BiocViews
cdf
affy
biocViews
BiocViews
BiocViews
cdf
affy
biocViews
updated 16.2 years ago by
James W. MacDonald
67k • written 16.2 years ago by
Mark W Kimpel
▴ 830
0
votes
3
replies
1.4k
views
inquiry for CDF file
BiocViews
biocViews
pdInfoBuilder
BiocViews
BiocViews
biocViews
pdInfoBuilder
16.2 years ago
Rob Dunne
▴ 230
0
votes
0
replies
1.4k
views
Sc03b_MR_v04 CDF package
BiocViews
Genetics
Yeast
cdf
probe
affy
affxparser
biocViews
oligo
pdInfoBuilder
Yeast
16.3 years ago
Ludo Muller
▴ 50
0
votes
0
replies
1.3k
views
confusion about nomenclature of illumina annotationpackages
BiocViews
Annotation
Cancer
Mus musculus
illuminaHumanv1
illuminaHumanv2
probe
annotate
16.4 years ago
Lynn Amon
▴ 280
0
votes
1
reply
1.9k
views
confusion about nomenclature of illumina annotation packages
BiocViews
annotate
biocViews
BiocViews
BiocViews
annotate
biocViews
updated 16.4 years ago by
Lynn Amon
▴ 280 • written 16.4 years ago by
Christian Kohler
▴ 130
0
votes
3
replies
1.6k
views
pd.mapping 10Karray
BiocViews
cdf
affyio
biocViews
oligo
pdInfoBuilder
BufferedMatrix
BiocViews
BiocViews
cdf
updated 17.3 years ago by
Seth Falcon
★ 7.4k • written 17.3 years ago by
Marianne Tuefferd
▴ 10
0
votes
0
replies
1.4k
views
BioC 1.9 is released!
BiocViews
SNP
Microarray
Annotation
Normalization
Visualization
Network
Infrastructure
SNP
18.2 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.0k
views
getting a list of packages by biocView tags
BiocViews
biocViews
BiocViews
BiocViews
biocViews
updated 18.6 years ago by
Seth Falcon
★ 7.4k • written 18.6 years ago by
Roels, Steven
▴ 50
0
votes
0
replies
1.5k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews
aCGH
SNP
Microarray
Annotation
GO
Clustering
Cancer
Yeast
cdf
probe
RMAGEML
18.6 years ago
Seth Falcon
★ 7.4k
38 results • Page
1 of 1
Recent ...
Replies
Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv
by
Guido Hooiveld
★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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