Bioconductor Biotype

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ssgsea GSVA biotype proteincoding msigdb

updated 14 months ago by tifaGis • 0 • written 2.0 years ago by snijesh ▴ 200

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2.1k

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grch37 transcripts biotype biomaRt ncrna

updated 7.3 years ago by James W. MacDonald 68k • written 7.3 years ago by sergio.martinezcuesta ▴ 10

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DESeq2 PCA rlog transformation biotype

7.6 years ago JoannaF ▴ 10

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1.3k

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scater sce biotype R

updated 7.8 years ago by Aaron Lun ★ 29k • written 7.8 years ago by thebadpenny • 0

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1.8k

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biomart TF biotype ensembl mus musculus

updated 7.9 years ago by Mike Smith ★ 6.6k • written 7.9 years ago by rbronste ▴ 60

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Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0

Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…

Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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