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Showing :
biotype
•
reset
4
votes
4
replies
2.9k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 4 months ago by
Ginny
• 0 • written 15 months ago by
snijesh
▴ 200
2
votes
1
reply
1.9k
views
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
sergio.martinezcuesta
▴ 10
1
vote
2
replies
2.1k
views
DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2
PCA
rlog transformation
biotype
6.8 years ago
JoannaF
▴ 10
1
vote
2
replies
1.1k
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.9 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
thebadpenny
• 0
1
vote
3
replies
1.6k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 7.1 years ago by
Mike Smith
★ 6.6k • written 7.1 years ago by
rbronste
▴ 60
5 results • Page
1 of 1
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Replies
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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