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biotype
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How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 13 months ago by
tifaGis
• 0 • written 24 months ago by
snijesh
▴ 200
2
votes
1
reply
2.1k
views
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
sergio.martinezcuesta
▴ 10
1
vote
2
replies
2.4k
views
DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2
PCA
rlog transformation
biotype
7.6 years ago
JoannaF
▴ 10
1
vote
2
replies
1.3k
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 7.7 years ago by
Aaron Lun
★ 29k • written 7.7 years ago by
thebadpenny
• 0
1
vote
3
replies
1.8k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 7.8 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
rbronste
▴ 60
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Comment: Bioconductor 3.22 Release Schedule
by
loganlstevens
• 0
This release reminds me of the strategies in [solitaired](https://solitaired.io) to overcome live solitaires.
Answer: Create consensusMatrix for codon bases
by
Kevin Blighe
★ 4.0k
To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: sigDF object in sesame
by
Kevin Blighe
★ 4.0k
Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
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Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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