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biotype
•
reset
4
votes
4
replies
4.6k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 12 months ago by
tifaGis
• 0 • written 22 months ago by
snijesh
▴ 200
2
votes
1
reply
2.1k
views
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
sergio.martinezcuesta
▴ 10
1
vote
2
replies
2.3k
views
DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2
PCA
rlog transformation
biotype
7.4 years ago
JoannaF
▴ 10
1
vote
2
replies
1.3k
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
thebadpenny
• 0
1
vote
3
replies
1.8k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 7.7 years ago by
Mike Smith
★ 6.6k • written 7.7 years ago by
rbronste
▴ 60
5 results • Page
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Comment: Error Loading Experiment from SimBenchData Package
by
ATpoint
★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups
by
Gordon Smyth
53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub
by
Peter Hickey
▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ReinholdGaylord99
• 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Votes
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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hauken_heyken
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Aaron Lun
★ 29k
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