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6.6k

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limma microarray block paired linear model

11.3 years ago • updated 11.2 years ago vas ▴ 40

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4.2k

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limma covariate block paired samples technical replicates

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by eleonoregravier ▴ 70

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12k

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batch effect combat limma block

updated 10.4 years ago by Ryan C. Thompson ★ 7.9k • written 10.4 years ago by eleonoregravier ▴ 70

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2.2k

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deseq2 block pca

9.7 years ago akp • 0

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2.4k

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limma block design and contrast matrix

10.7 years ago choofd • 0

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4.0k

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batch effect Coeficents non estimable block random effects limma design matrix

updated 8.3 years ago by Aaron Lun ★ 29k • written 8.3 years ago by mheydarpour ▴ 10

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2.8k

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limma microarray block

updated 2.5 years ago by Gordon Smyth 53k • written 7.1 years ago by tleona3 • 0

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1.7k

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diffbind block regression deseq2 chipseq

updated 5.3 years ago by Rory Stark ★ 5.3k • written 6.4 years ago by melnuesch ▴ 10

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2.6k

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limma sva block

updated 4.0 years ago by stuartthafass • 0 • written 11.4 years ago by kodream ▴ 20

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1.9k

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limma roast mroast block

updated 9.7 years ago by Ryan C. Thompson ★ 7.9k • written 9.7 years ago by barbara.shih • 0

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2.0k

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missmethyl diffvar design matrix limma block

updated 7.8 years ago by lhuang7 ▴ 50 • written 8.7 years ago by Simone ▴ 190

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1.5k

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limma BatchEffect duplicatecorrelation block batch

updated 5.3 years ago by Kevin Blighe ★ 4.0k • written 5.3 years ago by Katherine • 0

12 results • Page 1 of 1

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Answer: recursively counting package dependencies by ATpoint ★ 5.0k

Based on https://stat.ethz.ch/pipermail/bioc-devel/2021-October/018596.html it is something like ```r db <- available.packages(repos = …

Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within by Pat • 0

Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…

Comment: Question on processing compound protein groups in limpa by brianpeterson1210 • 0

Thank you[,][1] Appreciated! [1]: http://paint3d.org

Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Votes

Comment: Question about using LRT test for time course experiments with DESeq2

A: DESeq2 LRT test for multi-factor designs

Answer: RNA Seq using Lrt

Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

Awards • All

Teacher to ATpoint ★ 5.0k

Teacher to Michael Love 43k