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bootstrap
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1
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Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 2.2 years ago by
Michael Love
41k • written 2.2 years ago by
samuelcjx
• 0
0
votes
6
replies
1.1k
views
tximport lose transcript names with Salmon bootstrap
salmon
tximport
bootstrap
updated 4.1 years ago by
julia.jefferson23
• 0 • written 4.1 years ago by
Cindy
• 0
0
votes
0
replies
924
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.1 years ago
Larry K.
• 0
0
votes
0
replies
871
views
Jackknifing/bootstrapping input and output question
jackknifing
R
microarray
bootstrap
6.8 years ago
bhgyu
▴ 30
1
vote
7
replies
1.5k
views
[GSVM] bootstrapping error
GSVM
bootstrap
snow
updated 7.3 years ago by
Robert Castelo
★ 3.3k • written 7.3 years ago by
mforde84
▴ 20
0
votes
1
reply
3.6k
views
ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
8.9 years ago
wd
▴ 30
0
votes
1
reply
1.6k
views
DESeq2 -- Bootstrap subsampling to estimate distribution of expression
deseq2
bootstrap
differential expression
updated 9.1 years ago by
Michael Love
41k • written 9.1 years ago by
David Eccles (gringer)
▴ 30
7 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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