Bioconductor Bsgenome.hsapiens.ucsc.hg38

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BSgenome BSgenome.Hsapiens.UCSC.hg38 Offline

updated 5 months ago by James W. MacDonald 68k • written 5 months ago by firestar ▴ 20

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 22 months ago by ATpoint ★ 4.8k • written 22 months ago by Lillian • 0

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HiCDCPlus BSgenome.Hsapiens.UCSC.hg38

updated 22 months ago by merve.sahn • 0 • written 2.4 years ago by Yue • 0

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BSgenome.Hsapiens.UCSC.hg38 BSgenome.Hsapiens.UCSC.hg38.masked

3.0 years ago Bogdan ▴ 670

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org.Hs.eg.db BSgenome.Hsapiens.UCSC.hg38

4.3 years ago Konstantinos Yeles ▴ 80

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BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by ahorn720 ▴ 10 • written 4.3 years ago by rohitsatyam102 ▴ 20

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 5.2 years ago by kayla.interdonato ▴ 160 • written 5.2 years ago by jam526 • 0

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

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Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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