Bioconductor Bsgenome

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BSgenome

updated 11 weeks ago by James W. MacDonald 66k • written 3 months ago by Kate • 0

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565

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OrgDb BSgenome

7 months ago • updated 3 months ago mat149 ▴ 70

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610

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SNPlocs BSgenome

written 7 months ago by Stevie Pederson • 0

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722

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 11 months ago by ATpoint ★ 4.1k • written 11 months ago by Lillian • 0

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1.0k

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BSgenomeForge BSgenome

updated 11 months ago by James W. MacDonald 66k • written 11 months ago by kyliecode • 0

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773

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bsgenome GenomicFeatures package

updated 11 months ago by Hervé Pagès 16k • written 12 months ago by Manish • 0

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876

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BSgenome

updated 4 months ago by eviatar.weizman • 0 • written 2.0 years ago by remerandmaxence ▴ 10

7 results • Page 1 of 1

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

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Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

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