Bioconductor Cancerdata

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omics cancerdata Pathways

11 months ago omicsresearch • 0

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1.9k

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TCGAbiolinks RNASeq CancerData

updated 2.4 years ago by Tiago C. Silva ▴ 270 • written 2.5 years ago by JAcky • 0

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GEOquery CancerData limma RCy3 CancerInSilico

updated 3.1 years ago by Steve Lianoglou ★ 13k • written 3.1 years ago by Caitlin ▴ 50

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Microarray GEOquery cancerdata MicroarrayData

updated 3.3 years ago by James W. MacDonald 67k • written 3.3 years ago by Caitlin ▴ 50

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CancerData StructuralGenomics VirusStability pH-dependence

3.4 years ago jim.warwicker • 0

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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