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txdb granges cds orf R

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by q.thomas • 0

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genomeintervals UTRs exons CDS GenomicRanges

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by rubi ▴ 110

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biomart bioconductor grangeslist cds ribosome profiling

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Walter F. Baumann ▴ 10

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genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds

9.4 years ago madsheilskov ▴ 10

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cds

10.2 years ago KB ▴ 50

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genomicfeatures genomicranges cds overlap

updated 10.2 years ago by Michael Lawrence ★ 11k • written 10.2 years ago by madsheilskov ▴ 10

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genomicfeatures genomicranges cds overlap

updated 4.2 years ago by balajee • 0 • written 10.2 years ago by madsheilskov ▴ 10

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760