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cds
•
reset
0
votes
4
replies
1.8k
views
Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 6.0 years ago by
James W. MacDonald
66k • written 6.0 years ago by
q.thomas
• 0
1
vote
3
replies
1.5k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.3 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
xie186
• 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
rubi
▴ 110
3
votes
1
reply
1.9k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
2.6k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
7.8 years ago
madsheilskov
▴ 10
0
votes
3
replies
1.9k
views
how to get complete cds annotation information ?
cds
8.5 years ago
KB
▴ 50
2
votes
10
replies
2.3k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
madsheilskov
▴ 10
0
votes
1
reply
1.4k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.6 years ago by
balajee
• 0 • written 8.5 years ago by
madsheilskov
▴ 10
8 results • Page
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Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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