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chromosome
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1
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5
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2.5k
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how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.2 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 9 months ago by
James W. MacDonald
65k • written 3.7 years ago by
Mahan
• 0
0
votes
1
reply
789
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
xchen8
• 0
1
vote
1
reply
493
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 4.1 years ago by
swbarnes2
★ 1.3k • written 4.1 years ago by
missmoparker
• 0
0
votes
2
replies
780
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
knholm
• 0
0
votes
4
replies
779
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Bine
▴ 40
3
votes
5
replies
1.8k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 2.4 years ago by
Hervé Pagès
16k • written 2.4 years ago by
jon.klonowski
▴ 40
0
votes
2
replies
554
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
12 months ago
Liliian
• 0
2
votes
3
replies
1.9k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 6.2 years ago by
Hervé Pagès
16k • written 6.2 years ago by
Nathan Sheffield
▴ 10
0
votes
0
replies
515
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
4.1 years ago
heiko_kin
▴ 60
10 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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