Showing : classification • reset
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where to start?
Classification Clustering Category Classification Clustering Category
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 40
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6
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1.6k
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ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.5 years ago by ▴ 190 • written 18.5 years ago by ★ 7.4k
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5
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3.1k
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DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 11.1 years ago by 41k • written 11.1 years ago by ★ 13k
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2
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1.3k
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feature selection
Classification Classification
updated 21.1 years ago by ▴ 360 • written 21.1 years ago by ▴ 20
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2
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1.2k
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Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 19.9 years ago by ★ 1.0k • written 19.9 years ago by ▴ 180
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3
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985
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
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3
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1.1k
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Classification limma bridge Bayesian Classification limma bridge
19.7 years ago Gordon Smyth 50k
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2
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1.7k
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Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 15.6 years ago by ▴ 750 • written 15.6 years ago by ▴ 300
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3
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1.0k
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Generating random gene lists: does sample/resample generate random sets
Classification Classification
15.6 years ago Scott Ochsner ▴ 300
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2
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1.4k
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Problems with Affy names / BGA
Classification affy made4 Classification affy made4
updated 17.4 years ago by ▴ 510 • written 17.4 years ago by ▴ 310
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1
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865
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please fix link error in your bioconductor site
Microarray Classification Microarray Classification
updated 21.8 years ago by ★ 3.9k • written 21.8 years ago by ▴ 10
3
votes
2
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1.1k
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Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 5.5 years ago by 41k • written 5.5 years ago by • 0
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3
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2.8k
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PAMR- Package: Workflow and/or other methods
Classification Classification
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 70
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1
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1.5k
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Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 14.2 years ago by ★ 13k • written 14.2 years ago by 21k
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3
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1.6k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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2
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911
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RLMM questions
GO Classification cdf affy RLMM GO Classification cdf affy RLMM
updated 17.7 years ago by ★ 2.4k • written 17.7 years ago by ▴ 20
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votes
1
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1.1k
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
0
votes
1
reply
1.5k
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Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
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3
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1.5k
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MLSeq Mathematical Concepts
Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ★ 1.5k
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2
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1.1k
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OT: van 't Veer (2002) classifier
Classification Cancer Breast Classification Cancer Breast
updated 14.7 years ago by ★ 1.3k • written 14.7 years ago by ▴ 110
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3
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1.5k
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Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification CMA Classification CMA
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
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2
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1.1k
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Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification Classification
updated 9.7 years ago by 21k • written 9.7 years ago by ★ 13k
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1
reply
932
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Diagonal LDA in MLInterfaces
Classification Classification
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 90
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2
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1.5k
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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 830
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1
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2.2k
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edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 10
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1
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1.1k
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classification method applied to microarrays (CMA package)
Classification CMA Classification CMA
updated 14.5 years ago by ▴ 10 • written 14.5 years ago by ▴ 190
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1
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1.2k
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Sample size estimation for independent validation set
Microarray Classification PROcess Microarray Classification PROcess
updated 14.4 years ago by ▴ 110 • written 14.4 years ago by ▴ 10
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1
reply
681
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decideTests with nestedF
Classification Classification
18.8 years ago Lei Jiang ▴ 20
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4
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1.6k
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RandomForest, supervised machine learning and uncertainty
GO Classification GO Classification
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 370
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1
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1.1k
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Classification with large number of qualitative variables
R classification qualitative variables high dimensionnal
updated 7.4 years ago by ▴ 130 • written 7.4 years ago by • 0
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5
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4.5k
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probability of a point membership to a certain cluster
Classification Classification
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 60
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3
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3.0k
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Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 300
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0
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982
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Classification Society Annual Meeting
Classification Classification
16.1 years ago William Shannon ▴ 280
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0
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1.1k
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Cluster and classification research ggrad students
Classification Classification
15.7 years ago William Shannon ▴ 280
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0
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1.5k
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Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
15.5 years ago Renaud Gaujoux ▴ 170
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1.5k
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CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
15.1 years ago Renaud Gaujoux ▴ 170
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1.3k
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Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
14.5 years ago Reek, J. ▴ 10
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0
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720
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转发： 回复： Patent issues of classification algorithms
Microarray Classification Cancer Microarray Classification Cancer
14.4 years ago Martin Morgan 25k
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1.0k
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回复： 回复： : Patent issues of classification algorithms
Microarray Classification Microarray Classification
14.4 years ago qinghua xu ▴ 110
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0
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1.2k
views
Statistical approach to compare differentiall expressed gene lists
Microarray Classification Microarray Classification
14.3 years ago qinghua xu ▴ 110
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0
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1.2k
views
compare function in CMA package
Classification CMA Classification CMA
14.3 years ago Javier Pérez Florido ▴ 840
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0
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1.5k
views
R Course 28-29 March in Heidelberg (EMBL)
Classification Classification
14.2 years ago Wolfgang Huber ★ 13k
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0
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17k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.9 years ago David Lyon ▴ 340
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0
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878
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Fwd: question regarding to MLInterface
Network Classification Network Classification
13.4 years ago Vincent J. Carey, Jr. 6.7k
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0
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2.4k
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'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray Classification limma CMA Microarray Classification limma CMA
13.2 years ago Santosh Patnaik ▴ 30
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0
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738
views
Question about MCRestimate
Classification Classification
11.9 years ago ZHENG FU ▴ 10
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0
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1.4k
views
Overlapping ROC plots
Classification ROC graph Classification ROC graph
11.8 years ago Yadav Sapkota ▴ 130
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0
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950
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Questions regarding MCRestimate package
Classification MCRestimate Classification MCRestimate
11.7 years ago Guest User ★ 13k
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0
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1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
11.1 years ago CAMDA 2013 ▴ 30
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0
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1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
11.0 years ago CAMDA 2013 ▴ 30
50 results • Page 1 of 1
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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