Showing : classification • reset
3
votes
2
replies
1.1k
views
Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 5.6 years ago by 41k • written 5.6 years ago by • 0
1
vote
1
reply
2.2k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 10
1
vote
0
replies
1.6k
views
Gene names in limma Venn Diagrams
Classification limma Classification limma
20.6 years ago James Wettenhall ▴ 1000
1
vote
5
replies
1.2k
views
CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
5.7 years ago Jenny.chien • 0
1
vote
2
replies
1.5k
views
Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.5 years ago by ★ 13k • written 8.6 years ago by ▴ 830
0
votes
0
replies
1.5k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
11.5 years ago McGee, Monnie ▴ 300
0
votes
3
replies
3.0k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 300
0
votes
0
replies
2.1k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
11.1 years ago Matthew Thornton ▴ 350
0
votes
0
replies
981
views
Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
7.9 years ago svlachavas ▴ 830
0
votes
1
reply
869
views
please fix link error in your bioconductor site
Microarray Classification Microarray Classification
updated 21.8 years ago by ★ 3.9k • written 21.8 years ago by ▴ 10
0
votes
2
replies
1.3k
views
feature selection
Classification Classification
updated 21.1 years ago by ▴ 360 • written 21.1 years ago by ▴ 20
0
votes
0
replies
779
views
short course announcement
Microarray Normalization Preprocessing Classification Clustering Microarray Normalization
20.6 years ago mark@biostat.ucsf.edu ▴ 30
0
votes
0
replies
1.0k
views
Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.6 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
939
views
postdoc available
Pathways Network Classification Cancer Pathways Network Classification Cancer
20.3 years ago Jean-Philippe Vert ▴ 10
0
votes
0
replies
1.1k
views
Re: Classification question(Tom R. Fahland)
Classification DOSE Classification DOSE
20.0 years ago Stephen Henderson ★ 1.0k
0
votes
2
replies
1.2k
views
Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 20.0 years ago by ★ 1.0k • written 20.0 years ago by ▴ 180
0
votes
3
replies
1.1k
views
Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Classification limma bridge Bayesian Classification limma bridge
19.8 years ago Gordon Smyth 50k
0
votes
0
replies
629
views
rma on new samples
Classification probe Biobase affy PROcess Classification probe Biobase affy PROcess
19.1 years ago Kuhn, Max ▴ 70
0
votes
0
replies
1.0k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA
19.1 years ago Higgs, Debi ▴ 10
0
votes
0
replies
656
views
How to start?
Classification Clustering Category Classification Clustering Category
19.0 years ago Malik Yousef ▴ 40
0
votes
6
replies
1.2k
views
where to start?
Classification Clustering Category Classification Clustering Category
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 40
0
votes
1
reply
684
views
decideTests with nestedF
Classification Classification
18.8 years ago Lei Jiang ▴ 20
0
votes
0
replies
720
views
decideTests with nestedF
Classification Classification
18.8 years ago Gordon Smyth 50k
0
votes
6
replies
1.6k
views
ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 7.4k
0
votes
0
replies
876
views
LIMMA:nestedF in
Classification Classification
18.4 years ago Daniela Marconi ▴ 30
0
votes
0
replies
970
views
LIMMA:nestedF
Classification Classification
18.4 years ago daniela.marconi@libero.it ▴ 100
0
votes
0
replies
1.1k
views
Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
18.3 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
904
views
[RClassification on Imbalanced Data
Classification Classification
18.2 years ago portnoy@supereva.it ▴ 20
0
votes
0
replies
1.2k
views
Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
0
votes
0
replies
1.2k
views
Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
0
votes
0
replies
1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.2 years ago Mark Reimers ▴ 70
0
votes
0
replies
2.0k
views
PhD Position in Bioinformatics at the University Hospital Basel, Switzerland
Microarray Classification Cancer Lung Microarray Classification Cancer Lung
18.1 years ago Florent Baty ▴ 10
0
votes
0
replies
1.7k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.0 years ago Birgit Hauer ▴ 30
0
votes
2
replies
913
views
RLMM questions
GO Classification cdf affy RLMM GO Classification cdf affy RLMM
updated 17.7 years ago by ★ 2.4k • written 17.7 years ago by ▴ 20
0
votes
0
replies
803
views
bioinformatics positions available
Classification Cancer Classification Cancer
17.7 years ago Tarca, Adi ▴ 570
0
votes
1
reply
935
views
Diagonal LDA in MLInterfaces
Classification Classification
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 90
0
votes
0
replies
782
views
stat.diag.daB MLInterfaces
Classification MLInterfaces Classification MLInterfaces
17.5 years ago mpg33@drexel.edu ▴ 90
0
votes
2
replies
1.4k
views
Problems with Affy names / BGA
Classification affy made4 Classification affy made4
updated 17.4 years ago by ▴ 510 • written 17.5 years ago by ▴ 310
0
votes
0
replies
925
views
Course*** R/S+: Fundamentals and Programming Techniques - Princeton, March 1-2
Microarray Classification Clustering Regression Microarray Classification Clustering
17.2 years ago sue@xlsolutions-corp.com ▴ 570
0
votes
0
replies
1.6k
views
Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
17.2 years ago Tarca, Adi ▴ 570
0
votes
0
replies
609
views
bioc-announce: vsn 2
Classification vsn Classification vsn
17.1 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
1.3k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
16.5 years ago Ana Conesa ▴ 340
0
votes
0
replies
985
views
Classification Society Annual Meeting
Classification Classification
16.2 years ago William Shannon ▴ 280
0
votes
3
replies
990
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
0
replies
1.1k
views
Cluster and classification research ggrad students
Classification Classification
15.7 years ago William Shannon ▴ 280
0
votes
2
replies
1.7k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 15.7 years ago by ▴ 750 • written 15.7 years ago by ▴ 300
0
votes
3
replies
1.0k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
15.7 years ago Scott Ochsner ▴ 300
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
0
replies
1.5k
views
Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
15.5 years ago Renaud Gaujoux ▴ 170
0
votes
0
replies
1.5k
views
CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
15.2 years ago Renaud Gaujoux ▴ 170
50 results • Page 1 of 1
Recent ...
Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, 2 minutes ago
WEHI, Melbourne, Australia, 6 minutes ago
United States, 11 minutes ago
EMBL Heidelberg, 32 minutes ago
Canada, 38 minutes ago
Traffic: 574 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6