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Job:
Bioconductor Core developers group opening
R
cloud
github
python
git
20 months ago
Vincent J. Carey, Jr.
6.7k
0
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0
replies
1.1k
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Job:
Postdoctoral Associate - Cancer Computational Biology
cancer
genomics
xenograph
cloud
Job
5.8 years ago
tyler.chukwu
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5
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2
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2.6k
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Copying Amazon Bioconductor AMI to another zone
amazon
cloud
updated 7.5 years ago by
Valerie Obenchain
★ 6.8k • written 7.5 years ago by
Thomas Sandmann
▴ 90
0
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2
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1.6k
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How to launch a preconfigured Bioconductor AMI session using the free tier with RStudio Server?
bioconductor
amazon
ami
cloud
updated 7.8 years ago by
shepherl
3.8k • written 7.8 years ago by
kdkorthauer
• 0
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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