Bioconductor Co-expression

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biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna

15 months ago Fernanda • 0

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1.3k

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network co-expression WGCNA

updated 3.3 years ago by andres.firrincieli ▴ 50 • written 3.3 years ago by ikumar2000 ▴ 10

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1.2k

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wgcna co-expression

updated 6.5 years ago by mikhael.manurung ▴ 280 • written 6.5 years ago by Lin ▴ 50

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1.5k

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wgcna network co-expression rnaseq

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by Arindam ▴ 80

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6.3k

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WGCNA R network co-expression

updated 3.0 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by avelarbio46 ▴ 10

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Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0

This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …

Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0

> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…

Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k

Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…

Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k

Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…

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A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

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