Bioconductor Co-expression

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673

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biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna

17 months ago Fernanda • 0

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1.3k

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network co-expression WGCNA

updated 3.4 years ago by andres.firrincieli ▴ 50 • written 3.4 years ago by ikumar2000 ▴ 10

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1.2k

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wgcna co-expression

updated 6.5 years ago by mikhael.manurung ▴ 280 • written 6.6 years ago by Lin ▴ 50

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1.6k

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wgcna network co-expression rnaseq

updated 6.8 years ago by Peter Langfelder ★ 3.0k • written 6.8 years ago by Arindam ▴ 80

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6.5k

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WGCNA R network co-expression

updated 3.1 years ago by Peter Langfelder ★ 3.0k • written 6.8 years ago by avelarbio46 ▴ 10

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Comment: How to convert .raw data for use in xcms by a2a2asawhaa • 0

try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760