Showing : co-expression • reset
0
votes
0
replies
615
views
WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
15 months ago Fernanda • 0
2
votes
1
reply
1.3k
views
WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.2 years ago by ▴ 50 • written 3.3 years ago by ▴ 10
0
votes
1
reply
1.2k
views
use differences in expression as input for co-expression network?
wgcna co-expression
updated 6.4 years ago by ▴ 280 • written 6.4 years ago by ▴ 50
4
votes
3
replies
1.5k
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by ▴ 80
7
votes
9
replies
6.2k
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 2.9 years ago by ★ 3.0k • written 6.6 years ago by ▴ 10
5 results • Page 1 of 1
Recent ...
Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to lamia11me • 0
Popular Question to Gordon Smyth 53k
Popular Question to Michael Love 43k
Popular Question to Luca • 0
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, 35 minutes ago
Melbourne, Australia, 1 hour ago
United States, 1 hour ago
United Kingdom, 1 hour ago
The city by the bay, 2 hours ago
Traffic: 2373 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6