Showing : co-expression • reset
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WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
16 months ago Fernanda • 0
2
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1
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1.3k
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.4 years ago by ▴ 50 • written 3.4 years ago by ▴ 10
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1.2k
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use differences in expression as input for co-expression network?
wgcna co-expression
updated 6.5 years ago by ▴ 280 • written 6.6 years ago by ▴ 50
4
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3
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1.5k
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WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by ▴ 80
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WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 3.1 years ago by ★ 3.0k • written 6.8 years ago by ▴ 10
5 results • Page 1 of 1
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Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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