Bioconductor Complex-design

Showing : complex-design • reset

votes

replies

1.4k

views

limma complex-design paired design

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by ML18 ▴ 10

votes

replies

2.5k

views

rnaseqpower sspa sample size sequencing complex-design

updated 8.8 years ago by m.van_iterson ▴ 20 • written 8.8 years ago by roser.navarro • 0

votes

replies

5.9k

views

limma paired samples complex-design

8.9 years ago aec ▴ 90

votes

replies

4.3k

views

limma model matrix limma design matrix complex-design

updated 9.4 years ago by Aaron Lun ★ 28k • written 9.4 years ago by Guido Hooiveld ★ 4.1k

vote

3.1k

views

deseq2 multiple factor design complex-design

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by sifujio • 0

vote

replies

6.9k

views

combat software error rnaseq complex-design

updated 10.1 years ago by Peter Langfelder ★ 3.0k • written 10.1 years ago by Stefano Mangiola ▴ 20

votes

replies

2.5k

views

edgeR complex-design

updated 10.1 years ago by James W. MacDonald 67k • written 10.1 years ago by lwc628 ▴ 20

7 results • Page 1 of 1

Recent ...

Replies

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

Awards • All