Bioconductor Complex-design

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limma complex-design paired design

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by ML18 ▴ 10

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2.6k

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rnaseqpower sspa sample size sequencing complex-design

updated 8.9 years ago by m.van_iterson ▴ 20 • written 8.9 years ago by roser.navarro • 0

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limma paired samples complex-design

9.0 years ago aec ▴ 90

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4.3k

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limma model matrix limma design matrix complex-design

updated 9.5 years ago by Aaron Lun ★ 28k • written 9.5 years ago by Guido Hooiveld ★ 4.1k

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deseq2 multiple factor design complex-design

updated 9.8 years ago by Michael Love 43k • written 9.8 years ago by sifujio • 0

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combat software error rnaseq complex-design

updated 10.2 years ago by Peter Langfelder ★ 3.0k • written 10.2 years ago by Stefano Mangiola ▴ 20

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edgeR complex-design

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by lwc628 ▴ 20

7 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40