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complex-design
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3
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4
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1.2k
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Complicated unbalanced block DOE with partially paired samples and analysis
limma
complex-design
paired design
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
ML18
▴ 10
0
votes
5
replies
2.3k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.3 years ago by
m.van_iterson
▴ 20 • written 8.3 years ago by
roser.navarro
• 0
9
votes
21
replies
5.5k
views
limma - complex design with paired samples, sex and batch effect
limma
paired samples
complex-design
8.5 years ago • updated 8.4 years ago
aec
▴ 90
7
votes
6
replies
4.0k
views
Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma
model matrix
limma design matrix
complex-design
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
Guido Hooiveld
★ 4.0k
1
vote
1
reply
3.0k
views
Factorial Design with DESeq2; contrast problem.
deseq2
multiple factor design
complex-design
updated 9.3 years ago by
Michael Love
42k • written 9.3 years ago by
sifujio
• 0
1
vote
3
replies
6.6k
views
Combat - error - system is computationally singular
combat
software error
rnaseq
complex-design
updated 9.7 years ago by
Peter Langfelder
★ 3.0k • written 9.7 years ago by
Stefano Mangiola
▴ 10
7
votes
11
replies
2.3k
views
Using edgeR on pre-post treatment control design
edgeR
complex-design
updated 9.7 years ago by
James W. MacDonald
66k • written 9.7 years ago by
lwc628
▴ 20
7 results • Page
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Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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