Bioconductor Complex-design

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limma complex-design paired design

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by ML18 ▴ 10

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rnaseqpower sspa sample size sequencing complex-design

updated 8.7 years ago by m.van_iterson ▴ 20 • written 8.7 years ago by roser.navarro • 0

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limma paired samples complex-design

8.9 years ago • updated 8.8 years ago aec ▴ 90

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4.2k

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limma model matrix limma design matrix complex-design

updated 9.4 years ago by Aaron Lun ★ 28k • written 9.4 years ago by Guido Hooiveld ★ 4.1k

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deseq2 multiple factor design complex-design

updated 9.7 years ago by Michael Love 42k • written 9.7 years ago by sifujio • 0

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combat software error rnaseq complex-design

updated 10.1 years ago by Peter Langfelder ★ 3.0k • written 10.1 years ago by Stefano Mangiola ▴ 20

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edgeR complex-design

updated 10.1 years ago by James W. MacDonald 67k • written 10.1 years ago by lwc628 ▴ 20

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Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by josephjohnsonlo • 0

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Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

Answer: featureCounts segmentation fault with large chromosomes by vkkodali ▴ 10

Thanks to @yangliao this issue is fixed in subread v2.0.8

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Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

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