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How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq
Bioconductor
conversion
3.4 years ago
heiko_kin
▴ 60
1
vote
7
replies
1.1k
views
BioMart webservices broken?
software error
ensemblID
conversion
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
mlee
• 0
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore
fcs
flow cytommetry
matrix
conversion
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
apurva
• 0
3
votes
6
replies
2.0k
views
biomaRt: Ensembl -> Entrez conversion error?
biomart
entrez gene identifiers
ensembl
conversion
updated 5.4 years ago by
Mike Smith
★ 6.5k • written 5.4 years ago by
EdgeR_A_Poe
▴ 10
3
votes
3
replies
1.7k
views
Does AnnotationHub replaces AnnotationDbi for ID conversion (e.g. entrez, refseq, symbols)?
conversion
symbol
entrez
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
dalloliogm
▴ 50
5 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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