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How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq
Bioconductor
conversion
3.4 years ago
heiko_kin
▴ 60
1
vote
7
replies
1.1k
views
BioMart webservices broken?
software error
ensemblID
conversion
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
mlee
• 0
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore
fcs
flow cytommetry
matrix
conversion
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
apurva
• 0
3
votes
6
replies
2.0k
views
biomaRt: Ensembl -> Entrez conversion error?
biomart
entrez gene identifiers
ensembl
conversion
updated 5.4 years ago by
Mike Smith
★ 6.5k • written 5.4 years ago by
EdgeR_A_Poe
▴ 10
3
votes
3
replies
1.7k
views
Does AnnotationHub replaces AnnotationDbi for ID conversion (e.g. entrez, refseq, symbols)?
conversion
symbol
entrez
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
dalloliogm
▴ 50
5 results • Page
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…
Answer: Fold change calculation in Diffbind vs. DESEQ2?
by
Michael Love
41k
There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.
Answer: Timecourse RNASeq analysis
by
Michael Love
41k
There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …
Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
by
Michael Love
41k
You can either turn off independent filtering in `results` or use `ihw` see the vignette.
Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Thanks Gordon for a detail guide! You have a great memory of time. GSVA also do differential express at pathway level (https://bioconductor…
Votes
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
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