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copywriteR
•
reset
3
votes
3
replies
3.8k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
jcarter
• 0
2
votes
9
replies
2.5k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
smcnulty
• 0
2
votes
4
replies
2.3k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
jcarter
• 0
3
votes
12
replies
2.1k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
TriS
▴ 200
0
votes
7
replies
2.0k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
smcnulty
• 0
1
vote
2
replies
1.7k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.6k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.8 years ago by
t.kuilman
▴ 170 • written 7.8 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.4k
views
CopywriteR error: "Error in .Method"
CopywriteR
7.8 years ago
Tom
▴ 10
1
vote
3
replies
1.4k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 7.9 years ago by
t.kuilman
▴ 170 • written 7.9 years ago by
thestaroceanster
• 0
0
votes
1
reply
1.3k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
sshung
• 0
1
vote
2
replies
1.3k
views
Copywriter output looks strange
copywriter
8.2 years ago
MatthewGField
▴ 10
2
votes
1
reply
1.2k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 8.3 years ago by
t.kuilman
▴ 170 • written 8.3 years ago by
Felix
• 0
0
votes
1
reply
1.1k
views
Problems with CopywriteR
copywriter
updated 7.1 years ago by
t.kuilman
▴ 170 • written 7.1 years ago by
filipzembol
• 0
0
votes
1
reply
896
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 5.6 years ago by
t.kuilman
▴ 170 • written 5.6 years ago by
magdaaverte
• 0
2
votes
4
replies
892
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.0 years ago by
oscarkrijgsman
▴ 20 • written 4.0 years ago by
Ram
▴ 200
0
votes
1
reply
552
views
CopywriteR output
CopywriteR
updated 27 days ago by
fer_talavera
• 0 • written 2.5 years ago by
Joshua
• 0
0
votes
2
replies
292
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
4 weeks ago • updated 27 days ago
fer_talavera
• 0
17 results • Page
1 of 1
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Replies
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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