Bioconductor Copywriter

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replies

296

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CopywriteR CopyhelpeR

4 weeks ago • updated 29 days ago fer_talavera • 0

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553

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CopywriteR

updated 29 days ago by fer_talavera • 0 • written 2.5 years ago by Joshua • 0

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892

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copywriter cnv

updated 4.0 years ago by oscarkrijgsman ▴ 20 • written 4.0 years ago by Ram ▴ 200

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897

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copywriter copynumber

updated 5.6 years ago by t.kuilman ▴ 170 • written 5.6 years ago by magdaaverte • 0

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2.1k

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s4vectors copywriter

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by TriS ▴ 200

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1.7k

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bioconductor biocparallel copywriter

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by genomic8328 ▴ 10

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1.1k

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copywriter

updated 7.1 years ago by t.kuilman ▴ 170 • written 7.1 years ago by filipzembol • 0

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1.6k

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copynumber cnvtools cnv copywriteR

updated 7.8 years ago by t.kuilman ▴ 170 • written 7.8 years ago by ahinsahr11 • 0

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1.4k

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CopywriteR

7.8 years ago Tom ▴ 10

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1.4k

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copywriter bam

updated 7.9 years ago by t.kuilman ▴ 170 • written 7.9 years ago by thestaroceanster • 0

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3.8k

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copywriter

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by jcarter • 0

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2.3k

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copywriter dnacopy

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by jcarter • 0

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1.3k

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copywriter

8.2 years ago MatthewGField ▴ 10

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2.5k

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CopywriteR copy number

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by smcnulty • 0

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2.0k

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copywriter slurm openMPI

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by smcnulty • 0

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1.3k

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copywriter bin size targeted sequencing

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by sshung • 0

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1.2k

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CopywriteR

updated 8.3 years ago by t.kuilman ▴ 170 • written 8.3 years ago by Felix • 0

17 results • Page 1 of 1

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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