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crispr
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
2.6 years ago
lpinello
• 0
0
votes
2
replies
1.5k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 15 months ago by
hyejo
• 0 • written 6.2 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.0k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.3 years ago
Rubén
• 0
6
votes
14
replies
2.0k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.7 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
942
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
3.8 years ago
bauer
▴ 10
0
votes
0
replies
1.0k
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
3.8 years ago
yzhang
• 0
0
votes
19
replies
2.2k
views
Help with using CRISPRseeker
CRISPR
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.4k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.0 years ago by
sdalin
• 0 • written 7.2 years ago by
neggersjasper
• 0
0
votes
4
replies
2.2k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
1.3k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
7.5 years ago
kfburbach
• 0
0
votes
6
replies
1.8k
views
Manipulating random CRISPR sequences
r
crispr
updated 8.0 years ago by
mousheng xu
▴ 10 • written 8.5 years ago by
shane
• 0
1
vote
1
reply
1.4k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.3 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
alexgraehl
▴ 20
2
votes
27
replies
4.0k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.6 years ago • updated 8.5 years ago
alexgraehl
▴ 20
13 results • Page
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Answer: Batch effect correction: methylome data
by
zhouwanding
▴ 10
I agree that the batch variable should be better modeled as a co-variate than explicit batch correction. There is also RUVm (https://www.nc…
Comment: Can I trust the differential expression analysis when the two groups overlap on
by
Eric Katagirya
• 0
Thanks @bioinfguru - I did the 3-D PCA plot ![PC1 vs PC3 plot][1] and also the scree plot ![Scree plot][2] but couldn't make much of the…
Answer: Can log2cpm be used for proteomics data normalization?
by
James W. MacDonald
65k
The term 'logCPM' is short for log counts/million counts, which is generally only applicable for count-based applications like RNA-Seq. Usu…
Comment: Retrieving ceRNA data from the starBase or ENCORI Web API
by
James W. MacDonald
65k
This post does not fit the theme of this forum.
Answer: Batch effect correction: methylome data
by
James W. MacDonald
65k
Unless you are using `DSS`, you shouldn't be using Beta values, but instead should be using M-values. It's not clear to me that you can sim…
Votes
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
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