Bioconductor Crispr

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crisprseek sgrna crispr cas9 R

8.6 years ago • updated 8.5 years ago alexgraehl ▴ 20

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CRISPR

updated 4.7 years ago by Julie Zhu ★ 4.3k • written 4.7 years ago by sharvari gujja ▴ 40

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2.0k

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crisprseek crispr gRNAefficacy grna

updated 3.7 years ago by Julie Zhu ★ 4.3k • written 3.7 years ago by Dawid G. Nowak ▴ 40

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1.8k

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r crispr

updated 7.9 years ago by mousheng xu ▴ 10 • written 8.5 years ago by shane • 0

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2.2k

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crispr edger deseq deseq2

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by emanuelvgoncalves • 0

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independentfiltering DESeq2 CRISPR

3.3 years ago • updated 3.2 years ago Rubén • 0

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1.5k

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edger processamplicons sgrna crispr

updated 14 months ago by hyejo • 0 • written 6.1 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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R crispr fastq

7.4 years ago kfburbach • 0

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EdgeR CRISPR Barcode processamplicons

updated 6.0 years ago by sdalin • 0 • written 7.1 years ago by neggersjasper • 0

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1.4k

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crisprseek R CRISPR sgRNA

updated 8.2 years ago by Julie Zhu ★ 4.3k • written 8.3 years ago by alexgraehl ▴ 20

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713

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CRISPR SingleCell Genomics

2.6 years ago lpinello • 0

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985

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Bioinformatics drug-discovery RNA-seq CRISPR Job

3.7 years ago yzhang • 0

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925

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CRISPR functional genomics single cell gene regulatory networks Job

3.7 years ago bauer ▴ 10

13 results • Page 1 of 1

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Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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