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customCDF
•
reset
7
votes
6
replies
5.6k
views
How to use brainarray custom cdf with oligo package?
oligo
customcdf
HTA
frma
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
sanj
▴ 20
1
vote
10
replies
5.2k
views
How to use brainarray custom cdf with any bioconductor package?
affy
oligo
customcdf
9.4 years ago • updated 9.1 years ago
rishi.dasroy
▴ 20
5
votes
4
replies
3.3k
views
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf
affymetrix microarrays
hgu133plus2
affy
6.4 years ago
rahil
▴ 30
0
votes
5
replies
2.5k
views
Load CDF files for Affymetrix ST 2.0 microarrays
microarray
oligo
cdf
customcdf
updated 8.5 years ago by
Guido Hooiveld
★ 3.9k • written 8.5 years ago by
Nathaniel
▴ 20
0
votes
7
replies
2.5k
views
How to use brainarray custom cdf for HTA platform?
hta
customcdf
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
pbachali
▴ 50
0
votes
0
replies
1.9k
views
Appropriate implementation of ComBat function for known batch effect correction and alternative methodologies of merging microarray datasets
sva
ComBat
customcdf
affymetrix microarrays
limma
8.3 years ago
svlachavas
▴ 830
3
votes
7
replies
1.7k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo
pdinfobuilder
pd.mogene.1.1.st
customcdf
updated 7.6 years ago by
James W. MacDonald
65k • written 8.1 years ago by
Guido Hooiveld
★ 3.9k
2
votes
1
reply
1.6k
views
BrainArray Custom CDFs and oligo
oligo
brainarray
rma
customcdf
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
lcordeiro
• 0
0
votes
3
replies
1.3k
views
justRMA and wrong customCDFs causing segfault
justrma
customCDF
segfault
updated 5.3 years ago by
Daniel
▴ 10 • written 8.5 years ago by
maria.lehtivaara
• 0
0
votes
2
replies
1.1k
views
Fixing brainarray repository link for mac os x
Annotation
GO
CustomCDF
cdf
gcrma
Annotation
GO
CustomCDF
cdf
gcrma
updated 14.4 years ago by
James W. MacDonald
65k • written 14.4 years ago by
Yair Benita
▴ 80
0
votes
3
replies
958
views
Custom cdf and Ensemble
customcdf
R
microarray
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
12021560-002
• 0
2
votes
3
replies
907
views
Using gcrma() and using the t-test to compare single genes of interest for disease vs healthy comparison?
gcrma
CustomCDF
Affyhgu133aExpr
limma
affy
updated 12 months ago by
James W. MacDonald
65k • written 13 months ago by
Pratik Mehta
▴ 10
0
votes
1
reply
850
views
Annotations of custom cdf files
customcdf
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
12021560-002
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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