Showing : cytofworkflow • reset
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FlowSOM with unrelated channels
FlowSOM cytofWorkflow
updated 2.7 years ago by ▴ 70 • written 2.7 years ago by • 0
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.8 years ago shuangshuang • 0
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Error: all(unlist(md_cols) %in% names(md)) is not TRUE
cytofWorkflow
updated 2.8 years ago by ▴ 70 • written 2.8 years ago by • 0
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flow cytometry differential expression through time
cytofWorkflow cytof diffcyt
5.0 years ago achaillon • 0
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CytofWorkflow and automate the classification of cellular sub-populations
cytofWorkflow
5.0 years ago achaillon • 0
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flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
5.1 years ago GFM ▴ 20
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diffcyt between cell populations
cytofWorkflow diffcyt
5.1 years ago GFM ▴ 20
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Updating package CATALYST
CATALYST cytofWorkflow
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
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941
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how to a load workflow package
cytofworkflow
6.2 years ago jianjunchencn • 0
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1.2k
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some errors in cytofWorkflow2 description
cytofWorkflow
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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