Bioconductor Cytofworkflow

Showing : cytofworkflow • reset

vote

912

views

FlowSOM cytofWorkflow

updated 2.4 years ago by helucro ▴ 70 • written 2.4 years ago by Anirban • 0

votes

replies

1.7k

views

grou heatmaps CyTOFpower cytofWorkflow

2.5 years ago shuangshuang • 0

votes

1.6k

views

cytofWorkflow

updated 2.5 years ago by helucro ▴ 70 • written 2.5 years ago by shuangshuang • 0

votes

replies

1.1k

views

cytofWorkflow cytof diffcyt

4.7 years ago achaillon • 0

votes

replies

777

views

cytofWorkflow

4.7 years ago achaillon • 0

votes

replies

968

views

cytofWorkflow cytofworkflow flowCore

4.8 years ago GFM ▴ 20

votes

replies

857

views

cytofWorkflow diffcyt

4.8 years ago GFM ▴ 20

votes

replies

1.8k

views

CATALYST cytofWorkflow

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by Brent.OCarrigan • 0

votes

878

views

cytofworkflow

5.9 years ago jianjunchencn • 0

votes

1.2k

views

cytofWorkflow

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by o.hunewald • 0

10 results • Page 1 of 1

Recent ...

Replies

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Your approach 1 is a bad idea. Subtracting the gene counts won't do what you want to do. I would personally check to see if there is any…

Comment: Can NanoString data be analyzed using DESeq2? by James W. MacDonald 68k

You can always discard, although you can also retain them to check for unexpected differences.

Comment: DESeq2 on NanoString Data by Michael Love 43k

Yes, if I discern a batch from EDA including looking at PCs, sample correlations, etc. It is close to SVA, we discuss both in the workflow…

Comment: DESeq2 on NanoString Data by thkapell ▴ 10

Thanks Michael. To this end, do you routinely use RUV or only when you detect a batch? It looks like it works in a similar fashion to SVA w…

Comment: Can NanoString data be analyzed using DESeq2? by thkapell ▴ 10

Thank you. I agree with your thoughts about the similarities of NanoString with RNA-seq. NanoString though, also has positive, negative pro…

Votes

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Comment: Are voomByGroup and voomLmFit compatible?

Awards • All