Showing : cytofworkflow • reset
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FlowSOM with unrelated channels
FlowSOM cytofWorkflow
updated 2.8 years ago by ▴ 70 • written 2.8 years ago by • 0
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2
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1.9k
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.9 years ago shuangshuang • 0
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1.7k
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Error: all(unlist(md_cols) %in% names(md)) is not TRUE
cytofWorkflow
updated 2.9 years ago by ▴ 70 • written 2.9 years ago by • 0
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1.2k
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flow cytometry differential expression through time
cytofWorkflow cytof diffcyt
5.1 years ago achaillon • 0
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871
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CytofWorkflow and automate the classification of cellular sub-populations
cytofWorkflow
5.1 years ago achaillon • 0
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1.1k
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flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
5.2 years ago GFM ▴ 20
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957
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diffcyt between cell populations
cytofWorkflow diffcyt
5.2 years ago GFM ▴ 20
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2
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2.0k
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Updating package CATALYST
CATALYST cytofWorkflow
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
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1
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959
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how to a load workflow package
cytofworkflow
6.2 years ago jianjunchencn • 0
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1
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1.3k
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some errors in cytofWorkflow2 description
cytofWorkflow
updated 7.3 years ago by 68k • written 7.3 years ago by • 0
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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