Bioconductor Cytofworkflow

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FlowSOM cytofWorkflow

updated 13 months ago by helucro ▴ 70 • written 13 months ago by Anirban • 0

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854

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grou heatmaps CyTOFpower cytofWorkflow

13 months ago shuangshuang • 0

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924

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cytofWorkflow

updated 13 months ago by helucro ▴ 70 • written 14 months ago by shuangshuang • 0

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701

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cytofWorkflow cytof diffcyt

3.3 years ago achaillon • 0

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511

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cytofWorkflow

3.3 years ago achaillon • 0

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643

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cytofWorkflow cytofworkflow flowCore

3.4 years ago GFM ▴ 20

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587

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cytofWorkflow diffcyt

3.4 years ago GFM ▴ 20

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1.3k

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CATALYST cytofWorkflow

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by Brent.OCarrigan • 0

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603

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cytofworkflow

4.5 years ago jianjunchencn • 0

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889

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cytofWorkflow

updated 5.6 years ago by James W. MacDonald 65k • written 5.6 years ago by o.hunewald • 0

10 results • Page 1 of 1

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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k