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cytofworkflow
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486
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FlowSOM with unrelated channels
FlowSOM
cytofWorkflow
updated 13 months ago by
helucro
▴ 70 • written 13 months ago by
Anirban
• 0
0
votes
2
replies
887
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
14 months ago
shuangshuang
• 0
0
votes
1
reply
956
views
Error: all(unlist(md_cols) %in% names(md)) is not TRUE
cytofWorkflow
updated 14 months ago by
helucro
▴ 70 • written 14 months ago by
shuangshuang
• 0
0
votes
0
replies
716
views
flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.4 years ago
achaillon
• 0
0
votes
0
replies
520
views
CytofWorkflow and automate the classification of cellular sub-populations
cytofWorkflow
3.4 years ago
achaillon
• 0
0
votes
0
replies
661
views
flowCore - linear transformation
cytofWorkflow
cytofworkflow
flowCore
3.5 years ago
GFM
▴ 20
0
votes
0
replies
599
views
diffcyt between cell populations
cytofWorkflow
diffcyt
3.5 years ago
GFM
▴ 20
2
votes
2
replies
1.4k
views
Updating package CATALYST
CATALYST
cytofWorkflow
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
Brent.OCarrigan
• 0
0
votes
1
reply
613
views
how to a load workflow package
cytofworkflow
4.5 years ago
jianjunchencn
• 0
0
votes
1
reply
901
views
some errors in cytofWorkflow2 description
cytofWorkflow
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
o.hunewald
• 0
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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