Bioconductor Dada2

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dada2 GenomeInfoDbData

updated 6.8 years ago by jiangjing_ing • 0 • written 6.9 years ago by navlern • 0

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dada2

updated 14 months ago by Yoon Young • 0 • written 2.9 years ago by lh290 ▴ 60

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r dada2 Bioconductor

updated 3.0 years ago by Axel Klenk ★ 1.0k • written 3.0 years ago by mschmidt ▴ 10

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dada2 conda phyloseq

updated 3.1 years ago by James W. MacDonald 65k • written 3.1 years ago by Daniel • 0

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deseq2 dada2

updated 6.2 years ago by benjamin.j.callahan ▴ 50 • written 6.2 years ago by blastzone.heimerdinger ▴ 20

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decipher dada2

updated 2.9 years ago by fabian.roger08 ▴ 10 • written 4.2 years ago by fabian.roger • 0

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dada dada2

14 months ago elliottchon97 • 0

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DADA2 .fq

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by mafusa20 • 0

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GenomeInfoDbData phyloseq dada2

2.3 years ago ymtan • 0

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bioconductor R dada2

updated 6.7 years ago by daniel.vantwisk ▴ 50 • written 6.7 years ago by rggriggs • 0

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Assigntaxonomy dada2

updated 2.1 years ago by shepherl 3.8k • written 2.1 years ago by safiq713 • 0

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R dada2 DECIPHER

updated 16 months ago by Erik Wright ▴ 150 • written 16 months ago by Nelli • 0

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dada2 515F - 806Rd

4.1 years ago beginner87 • 0

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998

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dada2 biostrings

updated 5.7 years ago by James W. MacDonald 65k • written 5.7 years ago by gradypierroz • 0

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dada2

2.7 years ago Yoan • 0

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954

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DECIPHER dada2

3.1 years ago anrongloh • 0

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827

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bioinformatics DADA2

20 months ago anasjamshed1994 • 0

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769

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dada2 Metagenomics DESeq2

updated 2.9 years ago by Michael Love 41k • written 2.9 years ago by GlycineMax • 0

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762

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phyloseq dada2

2.7 years ago Manijeh • 0

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429

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dada2 UNITE

8 months ago GlycineMax • 0

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335

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VariantDetection dada2 RNASeq

6 months ago Sara • 0

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329

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virology dada2 amplican Sequencing RNASeq

6 months ago Sara • 0

22 results • Page 1 of 1

Recent ...

Replies

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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