Bioconductor Dds

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344

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DESeqDataSetFromMatrix dds DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by naomi.croft • 0

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474

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Enzo.Scifo • 0

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1.1k

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deseq2 cooks distance dds

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by ipso • 0

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991

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deseq2 dds RPKM

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by harry.horsnell.17 • 0

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2.2k

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deseq2 rld pheatmap dds

updated 6.5 years ago by Michael Love 41k • written 8.6 years ago by rahel14350 ▴ 10

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4.9k

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deseq2 DDS

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by rrcutler ▴ 70

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4.7k

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Deseq2 dds confounders

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by colaneri ▴ 30

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Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

Answer: DESeq2 v1.35.0 by James W. MacDonald 65k

Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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