Showing : de analysis • reset
3
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6
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2.6k
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Why NanoStringDiff package so slow?
NanoStringDiff NanoString nCounter DE analysis
updated 23 months ago by • 0 • written 6.1 years ago by ▴ 60
1
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8
replies
2.8k
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[Outlier Gene removal] - One sample with outlier counts for some genes
RNAseq DESeq2 outlier counts DE analysis
updated 5.3 years ago by ★ 4.0k • written 5.3 years ago by • 0
0
votes
1
reply
1.2k
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miR DE analysis using DeSeq2
DE analysis miR deseq2 mirplant
updated 7.9 years ago by 43k • written 7.9 years ago by • 0
0
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3
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1.9k
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Is the CPM filtering method from NOISeq unsupervised?
rnaseq de analysis gene filtering noiseq
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 50
2
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7
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3.1k
views
About differentially expressed genes that found by edgeR
edgeR DE analysis fold change cpm
updated 9.1 years ago by ★ 7.9k • written 9.1 years ago by ▴ 20
5
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4
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2.6k
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Why does the filtering of lowly expressed genes for analysis with edgeR must be done unsupervised?
edgeR RNAseq DE analysis gene filtering
9.2 years ago Mau ▴ 50
6 results • Page 1 of 1
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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