Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
decideTests
•
reset
2
votes
5
replies
3.1k
views
How to use q.value cutt off in "decideTests" function for RNAseq differential expression analysis
rnaseq
decideTests
limma
qvalue
8.9 years ago
anver
• 0
3
votes
2
replies
774
views
Is it ok to use decideTests on linearly dependent contrasts?
limma
decidetests
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
Ryan C. Thompson
★ 7.9k
3
votes
4
replies
962
views
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
limma
decidetests
updated 7.5 years ago by
Gordon Smyth
50k • written 7.5 years ago by
ahmed.asadik
• 0
4
votes
5
replies
5.0k
views
decideTests() options in LIMMA
limma
B stats
decideTests
updated 21 months ago by
krushnach80
• 0 • written 9.0 years ago by
Elsa
• 0
5
votes
6
replies
1.4k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
mikhael.manurung
▴ 270
4
votes
4
replies
1.2k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 5.3 years ago by
Koen Van den Berge
▴ 180 • written 5.3 years ago by
maltethodberg
▴ 170
0
votes
2
replies
739
views
decideTests vs topTable results
decideTests
topTable
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
Anna
▴ 20
0
votes
5
replies
1.2k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
irene.roman
• 0
0
votes
1
reply
600
views
Decidetest results summary different from results written as .csv file
edgeR
voom
decidetests
DEG
updated 12 months ago by
Gordon Smyth
50k • written 12 months ago by
Ankita
• 0
3
votes
1
reply
1.2k
views
Limma -decideTests interpretation for M-values
limma
decidetests
methylation
updated 8.1 years ago by
Sean Davis
21k • written 8.1 years ago by
kraiczy
▴ 10
1
vote
3
replies
1.6k
views
limma decideTests results; how to get/sort most significant Genes?
limma
decidetests
updated 7.6 years ago by
Axel Klenk
★ 1.0k • written 7.6 years ago by
bi_Scholar
• 0
1
vote
2
replies
1.2k
views
limma decideTests global method with multiple groups
limma
decidetests
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
jamie.gearing
▴ 60
12 results • Page
1 of 1
Recent ...
Replies
Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards
• All
Popular Question
to
Leo Lahti
▴ 40
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Locations
• All
Ireland,
23 minutes ago
China,
29 minutes ago
United States,
1 hour ago
WEHI, Melbourne, Australia,
1 hour ago
India,
2 hours ago
Traffic: 534 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6