Bioconductor DecideTests

Showing : decideTests • reset

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746

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decideTests topTable limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Anna ▴ 20

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607

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edgeR voom decidetests DEG

updated 13 months ago by Gordon Smyth 50k • written 13 months ago by Ankita • 0

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limma B stats decideTests

updated 21 months ago by krushnach80 • 0 • written 9.0 years ago by Elsa • 0

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limma eBayes decideTests topTable

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by irene.roman • 0

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limma stageR decideTests

updated 5.3 years ago by Koen Van den Berge ▴ 180 • written 5.3 years ago by maltethodberg ▴ 180

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777

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limma decidetests

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by Ryan C. Thompson ★ 7.9k

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limma anova decidetests

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by mikhael.manurung ▴ 270

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limma decidetests

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by jamie.gearing ▴ 60

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limma decidetests

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by ahmed.asadik • 0

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limma decidetests

updated 7.6 years ago by Axel Klenk ★ 1.0k • written 7.6 years ago by bi_Scholar • 0

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limma decidetests methylation

updated 8.2 years ago by Sean Davis 21k • written 8.2 years ago by kraiczy ▴ 10

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rnaseq decideTests limma qvalue

8.9 years ago anver • 0

12 results • Page 1 of 1

Recent ...

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Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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