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densityplot
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1
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2
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1.7k
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Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
6.8 years ago
peter.fransquet
• 0
1
vote
2
replies
1.2k
views
Stacked density plots not working in for loop (graphical device crashing?)
densityplot
stacked
for loop
7.0 years ago
k.teijgeler
• 0
0
votes
3
replies
2.0k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
8.4 years ago
annabelle.congras
▴ 10
2
votes
6
replies
3.0k
views
Density plots microarray
microarray
limma
normalization
densityplot
updated 9.2 years ago by
Axel Klenk
★ 1.1k • written 9.2 years ago by
Eleni Christodoulou
▴ 150
0
votes
11
replies
3.4k
views
assign the y-scale relation in flowViz densityplot
flowviz
densityplot
updated 9.5 years ago by
magomudw
• 0 • written 10.2 years ago by
peterfoster
▴ 20
5 results • Page
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Comment: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
sloperun3az
• 0
Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…
Comment: compute_fasta_digest does not match Salmon index hash
by
sloperun3az
• 0
The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …
Comment: parameters of filterByExpr
by
Paul Harrison
▴ 110
It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Gordon Smyth
52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Votes
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
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